Daniel Baker (dnbaker)

dnbaker

Geek Repo

Company:@langmead-lab

Location:Baltimore, MD

Twitter:@dnb_hopkins

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Daniel Baker's starred repositories

ZLUDA

CUDA on ??? GPUs

Language:RustLicense:Apache-2.0Stargazers:8840Issues:126Issues:159

svox2

Plenoxels: Radiance Fields without Neural Networks

Language:PythonLicense:BSD-2-ClauseStargazers:2809Issues:48Issues:127

pbrt-v4

Source code to pbrt, the ray tracer described in the forthcoming 4th edition of the "Physically Based Rendering: From Theory to Implementation" book.

Language:C++License:Apache-2.0Stargazers:2792Issues:67Issues:311

MAE-pytorch

Unofficial PyTorch implementation of Masked Autoencoders Are Scalable Vision Learners

consistencydecoder

Consistency Distilled Diff VAE

Language:PythonLicense:MITStargazers:2120Issues:22Issues:19

koila

Prevent PyTorch's `CUDA error: out of memory` in just 1 line of code.

Language:PythonLicense:MITStargazers:1816Issues:11Issues:28

TEASER-plusplus

A fast and robust point cloud registration library

Language:C++License:MITStargazers:1727Issues:46Issues:149

Swin-Unet

[ECCVW 2022] The codes for the work "Swin-Unet: Unet-like Pure Transformer for Medical Image Segmentation"

DirectVoxGO

Direct voxel grid optimization for fast radiance field reconstruction.

Language:PythonLicense:NOASSERTIONStargazers:1036Issues:25Issues:66

PaLM-pytorch

Implementation of the specific Transformer architecture from PaLM - Scaling Language Modeling with Pathways

Language:PythonLicense:MITStargazers:817Issues:16Issues:11

pipes

Pipelines for expressive code on collections in C++

Language:C++License:MITStargazers:794Issues:35Issues:44

wise-ft

Robust fine-tuning of zero-shot models

Language:PythonLicense:NOASSERTIONStargazers:620Issues:6Issues:25

Clair3

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

netrd

A library for network {reconstruction, distances, dynamics}

Language:PythonLicense:MITStargazers:165Issues:10Issues:98

echtvar

using all the bits for echt rapid variant annotation and filtering

Language:RustLicense:MITStargazers:138Issues:4Issues:27

SISH

Fast and scalable search of whole-slide images via self-supervised deep learning - Nature Biomedical Engineering

Language:PythonLicense:GPL-3.0Stargazers:95Issues:4Issues:7

gateloop-transformer

Implementation of GateLoop Transformer in Pytorch and Jax

Language:PythonLicense:MITStargazers:85Issues:11Issues:1

esgd

ESGD-M is a stochastic non-convex second order optimizer, suitable for training deep learning models, for PyTorch.

Language:PythonLicense:MITStargazers:56Issues:5Issues:0

BALNMP

Predicting Axillary Lymph Node Metastasis in Early Breast Cancer Using Deep Learning on Primary Tumor Biopsy Slides, BCNB Dataset

fulgor

Fulgor is a fast and space-efficient colored de Bruijn graph index.

Language:C++License:MITStargazers:41Issues:6Issues:19

lphash

Fast and compact locality-preserving minimal perfect hashing for k-mer sets.

Language:C++License:MITStargazers:41Issues:5Issues:8

Protein-Localization-Transformer

Code for CELL-E: Biological Zero-Shot Text-to-Image Synthesis for Protein Localization Prediction

Language:PythonLicense:MITStargazers:28Issues:1Issues:0

Movi

Fast and cache-efficient full-text pangenome index

Language:C++License:GPL-3.0Stargazers:25Issues:1Issues:1

dynamap

A framework which is capable of mapping rigid and non-rigid scenes and localize camera in the environment at the same time

Language:C++License:MITStargazers:24Issues:0Issues:0

GOAT

Official Code Repository for the paper "Graph Ordering Attention Networks"

Language:PythonLicense:MITStargazers:19Issues:2Issues:3

libhmmer-sys

A thin rust wrapper around libhmmer

Language:RustLicense:BSD-3-ClauseStargazers:5Issues:0Issues:0

DrugLinker

Simple exact-matching algorithm to standardise drug names appearing on the DrugBank open-access repository

Language:PythonLicense:MITStargazers:4Issues:2Issues:0

Markonv_figures

Markonv: a novel convolutional layer for identifying inter-positional correlations effectively and efficiently This is the repository for reproducing figures and tables in the paper.

Language:PythonLicense:MITStargazers:3Issues:1Issues:0

pacsketch

Network Anomaly Detection Using Probabilistic Data Structures

Language:C++Stargazers:2Issues:1Issues:0