brentp / echtvar

using all the bits for echt rapid variant annotation and filtering

https://academic.oup.com/nar/advance-article/doi/10.1093/nar/gkac931/6775383

brentp/echtvar Issues

🐛 non ACGT ALT character
Updated 2 months ago8
Feature Request: Port/Add Description
Closed 2 months ago2
static binary
Closed 2 months ago6
-1 as a default missing value does not work when the actual annotation value could be -1
Closed 4 months ago12
error om encoding dbsnp - "Large file option has not been set". echtvar 0.1.7
Closed 7 months ago3
Echtvar slower on VCF with many samples
Closed 7 months ago2
Help message for echtvar anno should call the arg <OUTPUT_BCF>, not <OUTPUT_VCF>
Closed a year ago3
encode error
Updated a year ago1
position mistake of warning?:`[warning] found non ACGT ALT character 'N', encoding as 'T' for position: 1547942`
Closed 2 years ago1
warn for VCFv4.2:[warning] found non ACGT ALT character '*', encoding as 'T' for position: 774922
Closed 2 years ago11
dbsnp and multiallelic VCFs
Closed 2 years ago4
INFO field header key order
Closed 2 years ago3
Encode TSV indexed files
Closed 2 years ago2
Running on MacOS
Closed 2 years ago4
index out of range when encoding large VCF
Closed 2 years ago9
allow string (constants) in expressions
Updated 2 years ago
Multi-allelic sites
Closed 2 years ago4
Multiplier for float
Closed 2 years ago3
Kernel too old
Updated 2 years ago3
thread 'main' panicked at 'index out of bounds
Closed 2 years ago6
allow extracting and annotating with FILTER field and with flags
Closed 2 years ago1
sanitize alias
Updated 2 years ago
support multiple echtvar files
Closed 2 years ago
use thin_vec for larger variants
Updated 2 years ago1
handle 'chr21' vs '21'
Closed 2 years ago