dmnfarrell

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University College Dublin

Dublin, Ireland

http://dmnfarrell.github.io/

Damien Farrell's starred repositories

ColossalAI

Making large AI models cheaper, faster and more accessible

Language:PythonApache-2.038109 379 1580

Meshroom

3D Reconstruction Software

Language:PythonNOASSERTION10724 279 1565

panel

Panel: The powerful data exploration & web app framework for Python

Language:PythonBSD-3-Clause4326 57 3427

jupyterlite

Wasm powered Jupyter running in the browser 💡

Language:TypeScriptBSD-3-Clause3694 43 589

covid19_scenarios

Models of COVID-19 outbreak trajectories and hospital demand

Language:JavaScriptMIT1361 50 220

movingpandas

Movement trajectory classes and functions built on top of GeoPandas

Language:PythonBSD-3-Clause1156 39 219

rush

A cross-platform command-line tool for executing jobs in parallel

Language:GoMIT833 20 41

MolecularNodes

Toolbox for molecular animations in Blender, powered by Geometry Nodes.

Language:PythonMIT809 16 254

nglview

Jupyter widget to interactively view molecular structures and trajectories

Language:Jupyter NotebookNOASSERTION780 24 487

Agents.jl

Agent-based modeling framework in Julia

Language:JuliaMIT697 18 463

covid-19-excess-deaths-tracker

Source code and data for The Economist's covid-19 excess deaths tracker

Language:R642 51 21

BreezeStyleSheets

Breeze/BreezeDark-like Qt StyleSheets

Language:PythonMIT528 16 72

Prodigal

Prodigal Gene Prediction Software

Language:CGPL-3.0412 26 97

medaka

Sequence correction provided by ONT Research

Language:PythonNOASSERTION387 45 474

cyvcf2

cython + htslib == fast VCF and BCF processing

Language:CythonMIT359 7 212

DGE_workshop

Language:HTML358 22 33

awesome-panel

Awesome Panel supports Panel and its users. We want to show how awesome the framework is and help push it forward. ❤️🐍📈

Language:JavaScriptMIT335 10 48

RaGOO

RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag

Language:PythonMIT167 6 80

pyinstaller-action-windows

Github Action for building executables with Pyinstaller

Language:ShellMIT159 4 42

panel-chemistry

🧪📈 🐍. The purpose of the panel-chemistry project is to make it really easy for you to do DATA ANALYSIS and build powerful DATA AND VIZ APPLICATIONS within the domain of Chemistry using using Python and HoloViz Panel.

Language:PythonMIT115 6 16

quickle

A quicker pickle :cucumber:

Language:CNOASSERTION108 3 18

Illustrate

Biomolecular Illustration Tool

Language:FortranApache-2.0102 7 2

simulator

Spatiotemporal epidemic model introduced in the context of COVID-19, ACM TSAS, 2022

Language:PythonMIT75 17 8

dfast_core

DDBJ Fast Annotation and Submission Tool

Language:Python72 5 39

snp-pipeline

SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organisms sequenced from samples of interest to food safety.

Language:PythonNOASSERTION54 18 25

thonside

Python interpreter embeddable in a PySide2 widget

Language:PythonGPL-3.034 6 1

vSNP

vSNP -- validate SNPs

Language:PythonGPL-3.019 7 11

fast-lineage-caller

Language:PythonGPL-3.01200

Mesa-SIR

A Mesa-based ABM library for epidemiological (SIR) modeling.

Language:PythonMIT10 40

intro_spatial_abm

Intro to creating spatial ABM with Netlogo and QGIS

300