dimenwarper

transformers

🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

COVID-19

Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

the_silver_searcher

A code-searching tool similar to ack, but faster.

alphafold

Open source code for AlphaFold.

machine-learning-interview

Machine Learning Interviews from FAANG, Snapchat, LinkedIn. I have offers from Snapchat, Coupang, Stitchfix etc. Blog: mlengineer.io.

BentoML

The easiest way to serve AI/ML models in production - Build Model Inference Service, LLM APIs, Multi-model Inference Graph/Pipelines, LLM/RAG apps, and more!

deepchem

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

adjustText

A small library for automatically adjustment of text position in matplotlib plots to minimize overlaps.

HashingDeepLearning

Codebase for "SLIDE : In Defense of Smart Algorithms over Hardware Acceleration for Large-Scale Deep Learning Systems"

just-pandas-things

An ongoing list of pandas quirks

csvs-to-sqlite

Convert CSV files into a SQLite database

dgl-lifesci

Python package for graph neural networks in chemistry and biology

selfies

Robust representation of semantically constrained graphs, in particular for molecules in chemistry

kotlingrad

🧩 Shape-Safe Symbolic Differentiation with Algebraic Data Types

asciiMol

Curses based ASCII molecule viewer for terminals.

mcx

Express & compile probabilistic programs for performant inference on CPU & GPU. Powered by JAX.

gene_lists

List of gene lists for genomic analyses.

openmemex

Open source, local-first knowledge platform.

awesome-small-molecule-ml

A curated list of resources for machine learning for small-molecule drug discovery

SKompiler

A tool for compiling trained SKLearn models into other representations (such as SQL, Sympy or Excel formulas)

block-aligner

SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.

galoisenne

🕸️ Graphs, finite fields and discrete dynamical systems in Kotlin

jax-unirep

Reimplementation of the UniRep protein featurization model.

pydca

Direct coupling analysis software for protein and RNA sequences

QCxMS

Quantum mechanic mass spectrometry calculation program

bayesian-perspective-q-learning

NP-Classifier

modality

Statistical tests for evaluating unimodality

litedict

SQLite as a Python dictionary