david-hoffman

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@10XGenomics

Pleasanton, CA

https://david-hoffman.github.io/

David Hoffman's starred repositories

glasbey

Algorithmically create or extend categorical colour palettes

Language:PythonMIT16800

nn-zero-to-hero

Neural Networks: Zero to Hero

Language:Jupyter NotebookMIT1065600

fuckitpy

The Python error steamroller.

Language:Python503500

Python

All Algorithms implemented in Python

Language:PythonMIT18123400

tiptop

:desktop_computer: Command-line system monitoring

Language:PythonMIT168100

python-package-template

A template repo for Python packages

Language:PythonApache-2.038000

wsireg

multimodal whole slide image registration in a graph structure

Language:PythonMIT7500

watchfiles

Simple, modern and fast file watching and code reload in python.

Language:PythonMIT164300

pycudasirecon

CUDA-accelerated reconstruction for 3D-structured-illumination

Language:PythonMIT800

napari-micromanager

GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets

Language:PythonBSD-3-Clause5700

miplib

A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.

Language:Jupyter NotebookNOASSERTION6600

fastats

A pure Python library for benchmarked, scalable numerics using numba.

Language:PythonMIT2600

opticspy

python optics module

Language:PythonMIT43400

cudasirecon

3D Structured illumination microscopy (3D-SIM) reconstruction software

Language:C++GPL-3.02400

academia-hugo

Academia is a Hugo resume theme. You can showcase your academic resume, publications and talks using this theme.

Language:HTMLMIT19500

Halide

a language for fast, portable data-parallel computation

Language:C++NOASSERTION573900

PSFmodels

Python bindings for scalar and vectorial models of the 3D microscope point spread function.

Language:C++GPL-3.03700

jax

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

Language:PythonApache-2.02870400

onnx

Open standard for machine learning interoperability

Language:PythonApache-2.01707300

hydra

Hydra is a framework for elegantly configuring complex applications

Language:PythonMIT831300

pycudadecon

Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy

Language:PythonMIT5500

zarr-python

An implementation of chunked, compressed, N-dimensional arrays for Python.

Language:PythonMIT137100

fdtd

A 3D electromagnetic FDTD simulator written in Python with optional GPU support

Language:PythonMIT44500

prefect

Prefect is a workflow orchestration tool empowering developers to build, observe, and react to data pipelines

Language:PythonApache-2.01516000

loguru

Python logging made (stupidly) simple

Language:PythonMIT1848600

K3D-jupyter

K3D lets you create 3D plots backed by WebGL with high-level API (surfaces, isosurfaces, voxels, mesh, cloud points, vtk objects, volume renderer, colormaps, etc). The primary aim of K3D-jupyter is to be easy for use as stand alone package like matplotlib, but also to allow interoperation with existing libraries as VTK.

Language:PythonMIT91400

nd2reader

Pure Python library for reading NIS Elements ND2 images and metadata

Language:PythonGPL-3.04300

matplotlib-cheatsheet

Matplotlib 3.1 cheat sheet.

Language:PythonBSD-2-Clause289500

z5

Lightweight C++ and Python interface for datasets in zarr and N5 format

Language:C++MIT10500

numba

NumPy aware dynamic Python compiler using LLVM

Language:PythonBSD-2-Clause955400