david-hoffman

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@10XGenomics

Pleasanton, CA

https://david-hoffman.github.io/

David Hoffman's starred repositories

Python

All Algorithms implemented in Python

Language:PythonMIT192783 5946 1518

jax

Composable transformations of Python+NumPy programs: differentiate, vectorize, JIT to GPU/TPU, and more

Language:PythonApache-2.030264 338 5639

loguru

Python logging made (stupidly) simple

Language:PythonMIT19758 142 1018

onnx

Open standard for machine learning interoperability

Language:PythonApache-2.017792 438 2820

prefect

Prefect is a workflow orchestration framework for building resilient data pipelines in Python.

Language:PythonApache-2.016159 161 5600

nn-zero-to-hero

Neural Networks: Zero to Hero

Language:Jupyter NotebookMIT11753 289 31

numba

NumPy aware dynamic Python compiler using LLVM

Language:PythonBSD-2-Clause9893 199 5246

hydra

Hydra is a framework for elegantly configuring complex applications

Language:PythonMIT8729 129 1391

Halide

a language for fast, portable data-parallel computation

Language:C++NOASSERTION5880 241 2625

fuckitpy

The Python error steamroller.

Language:Python5098 90 20

matplotlib-cheatsheet

Matplotlib 3.1 cheat sheet.

Language:PythonBSD-2-Clause2896 92 2

tiptop

:desktop_computer: Command-line system monitoring

Language:PythonMIT1756 14 44

watchfiles

Simple, modern and fast file watching and code reload in Python.

Language:PythonMIT1742 18 130

zarr-python

An implementation of chunked, compressed, N-dimensional arrays for Python.

Language:PythonMIT1499 44 879

K3D-jupyter

K3D lets you create 3D plots backed by WebGL with high-level API (surfaces, isosurfaces, voxels, mesh, cloud points, vtk objects, volume renderer, colormaps, etc). The primary aim of K3D-jupyter is to be easy for use as stand alone package like matplotlib, but also to allow interoperation with existing libraries as VTK.

Language:PythonMIT944 25 310

fdtd

A 3D electromagnetic FDTD simulator written in Python with optional GPU support

Language:PythonMIT489 23 64

opticspy

python optics module

Language:PythonMIT454 34 40

python-package-template

A template repo for Python packages

Language:PythonApache-2.0399 7 3

academia-hugo

Academia is a Hugo resume theme. You can showcase your academic resume, publications and talks using this theme.

Language:HTMLMIT202 6 27

glasbey

Algorithmically create or extend categorical colour palettes

Language:PythonMIT196 3 5

z5

Lightweight C++ and Python interface for datasets in zarr and N5 format

Language:C++MIT109 12 120

wsireg

multimodal whole slide image registration in a graph structure

Language:PythonMIT78 7 33

miplib

A Python software library with a variety of functions for (optical) microscopy image restoration, reconstruction and analysis.

Language:Jupyter NotebookNOASSERTION70 7 9

napari-micromanager

GUI interface between napari and micromanager powered by pymmcore-plus and pymmcore-widgets

Language:PythonBSD-3-Clause61 5 81

pycudadecon

Python wrapper for cudaDecon - GPU accelerated 3D deconvolution for microscopy

Language:PythonMIT59 6 26

nd2reader

Pure Python library for reading NIS Elements ND2 images and metadata

Language:PythonGPL-3.046 5 55

PSFmodels

Python bindings for scalar and vectorial models of the 3D microscope point spread function.

Language:C++GPL-3.044 6 5

cudasirecon

3D Structured illumination microscopy (3D-SIM) reconstruction software

Language:C++GPL-3.027 7 12

fastats

A pure Python library for benchmarked, scalable numerics using numba.

Language:PythonMIT26 50

pycudasirecon

CUDA-accelerated reconstruction for 3D-structured-illumination

Language:PythonMIT9 3 1