NHPatterson / wsireg

multimodal whole slide image registration in a graph structure

NHPatterson/wsireg Issues

how to apply manually matched point pairs?
Updated 4 months ago
Output resolution is not respected
Updated 4 months ago2
GeoJSON parsing error in Qupath for files after applying registration
Updated 4 months ago
Asymmetrical images
Updated 8 months ago1
Concatenating transformations across separate modalities
Updated 8 months ago
Output file generated by transform_images is corrupted.
Closed 9 months ago2
Initial transformation
Updated a year ago1
Citation
Updated a year ago1
register_images() hangs when calling UpdateLargestPossibleRegion()
Closed a year ago3
Use `ome-types` to build OME data
Updated 2 years ago6
Handling of `prepro_dict`
Closed 2 years ago2
Gigapixel WSI deformable registration
Closed 2 years ago3
Copy wsireg alignment scheme to rest of the channels from same modality?
Closed 2 years ago2
error calling wsi-reg on napari on windows
Closed 2 years ago2
PyCapsule_Import "_ITKCommonPython._C_API" is not valid
Closed 2 years ago4
Add convenience functionality to visualize registered images in `vizarr`/ `napari`
Updated 2 years ago
error on napari plugin
Closed 2 years ago5
Failed Alignment of sequential stained samples
Closed 2 years ago9
Register more than 2 images simultaneously?
Closed 2 years ago2
Error after installing
Closed 2 years ago4
Mixing dtypes / RGB in merged image files
Closed 3 years ago
Collect sub-resolution data and make it accessible for registration
Closed 3 years ago
Refact and extend transformation API to output images at different resolutions
Closed 3 years ago
Shapes and QuPath
Closed 3 years ago10
Numpy or Dask image array support
Closed 3 years ago17
Saving transformations doesn't work with `attachment_modalities`
Closed 3 years ago
Fix arraylike in config writer
Closed 3 years ago
No exported ometiff and frozen progress
Closed 3 years ago15
Add possibility to export both merged modalities and per wsi
Closed 3 years ago
Tifffile throws delayed import error
Closed 3 years ago2
Move handling of non-tiff images and czi images to aicsimageio
Closed 3 years ago
Use NetworkX to represent registration graph
Updated 3 years ago
Unifying `add_modality` API for code reuse
Updated 3 years ago1