ctjsw

bin

scripts

CAFE

Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.

CellFillColor

MS Excel UDF to get Cell fill color

common_scripts

my bin directory

Corset

Software for clustering de novo assembled transcripts and counting overlapping reads

CRISPR-meets-Docker

Docker images and IPython notebooks (bash kernel) for common CRISPR bioinformatic analysis: CRISPOR, CRISPResso and MAGeCK

ctjsw.github.io

blog

DockerTarBuilder

它是一个工作流。可快速构建指定架构/平台的docker镜像

EasyCodeML

gencode_regions

Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns etc from GTF files

general_pipelines

General pipeline scrips

genome-scripts

Genome Scripts used in fungal comparative genomics

gggenes

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

gitalk

igv

Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations

jmodeltest2

Automatically exported from code.google.com/p/jmodeltest2

orthomcl-pipeline

Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/

pgzip

Go parallel gzip (de)compression

PyCircos

Draw Circos in Python

r-ninja

R语言忍者秘笈

Scripts

scRNA_smart_seq2

seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang

shinyCircos

an R/shiny application for creation of Circos plot interactively

Silva2014_RustPhylogenomics

The set of scripts used in Silva et al. 2014 "Genomic patterns of positive selection at the origin of rust fungi"

slidex

Convert PowerPoint Slides to xaringan (remark.js) Slides

TBtools

GUI/CommandLine Tool Box for biologistists to utilize NGS data.