ctjsw's repositories
CAFE
Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
CellFillColor
MS Excel UDF to get Cell fill color
common_scripts
my bin directory
Corset
Software for clustering de novo assembled transcripts and counting overlapping reads
ctjsw.github.io
blog
gencode_regions
Extract 3'UTR, 5'UTR, CDS, Promoter, Genes, Introns etc from GTF files
general_pipelines
General pipeline scrips
genome-scripts
Genome Scripts used in fungal comparative genomics
gggenes
➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2
igv
Integrative Genomics Viewer. Fast, efficient, scalable visualization tool for genomics data and annotations
jmodeltest2
Automatically exported from code.google.com/p/jmodeltest2
orthomcl-pipeline
Automates running of OrthoMCL software from http://orthomcl.org/common/downloads/software/v2.0/
pgzip
Go parallel gzip (de)compression
r-ninja
R语言忍者秘笈
seqkit
A cross-platform and ultrafast toolkit for FASTA/Q file manipulation in Golang
shinyCircos
an R/shiny application for creation of Circos plot interactively
Silva2014_RustPhylogenomics
The set of scripts used in Silva et al. 2014 "Genomic patterns of positive selection at the origin of rust fungi"
slidex
Convert PowerPoint Slides to xaringan (remark.js) Slides