ctjsw

rustdesk

An open-source remote desktop application designed for self-hosting, as an alternative to TeamViewer.

gpt_academic

为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, moss等。

DeepLearning

深度学习入门教程, 优秀文章, Deep Learning Tutorial

dataviz

A book covering the fundamentals of data visualization

gget

🧬 gget enables efficient querying of genomic reference databases

natsort

Simple yet flexible natural sorting in Python.

foldseek

Foldseek enables fast and sensitive comparisons of large structure sets.

Guideline-for-Computational-Biology-and-Bioinformatics

CS_CCME_Posts

公众号推送备份

ggsankey

Make sankey, alluvial and sankey bump plots in ggplot

CLEAN

CLEAN: a contrastive learning model for high-quality functional prediction of proteins

blobtools

Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets

Helixer

Using Deep Learning to predict gene annotations

avocado

Avocado is a multi-scale deep tensor factorization model that learns a latent representation of the human epigenome and enables imputation of epigenomic experiments that have not yet been performed.

FlashFry

FlashFry: The rapid CRISPR target site characterization tool

BioinfTraining

Repository for bioinformatics training at the Norwegian Veterinary Institute

JBrowseR

R interface to the JBrowse 2 Linear Genome View.

assembly-annotation-pipeline

Plant genome assembly and annotation pipeline using snakemake

GWideCodeML

A Python package for testing evolutionary hypotheses in genome-wide approaches.

shortbred

ShortBRED is a pipeline to take a set of protein sequences, reduce them to a set of unique identifying strings ("markers"), and then search for these markers in metagenomic data and determine the presence and abundance of the protein families of interest.

maker

Genome Annotation Pipeline

crisflash

repeatR

read and analyse RepeatMasker output

GFAP

a software for annotating plant genes

wgap

Whole Genome Annotation Pipeline

crispRdesignR

Software used to design guide RNA sequences for CRISPR/Cas9 genome editing

Extract_Consensus_Sequences_of_Genes_from_BAM_parallel

This is a series of scripts on the rapid construction of target interval consensus sequences from bam files and the rapid construction of phylogenetic trees as well as visualisations

genome-size

examination of genome size across all kingdoms

CellFillColor

MS Excel UDF to get Cell fill color

Matlab-Colony-Analyzer-Toolkit

A toolkit written in Matlab for quantifying microbial colonies grown on agar plates in a systematic grid.