Cornelius Roemer's repositories
pango-sequences
Consensus sequences for each Pango lineage
pango-designation-dates
Contains dates on which each Pango lineage was designated
nwk-formatter
Formatting newick trees for manual editing
rki-abwasser-reports
Easy to view version of RKI SARS-CoV-2 wastewater surveillance reports
argo-cd
Declarative Continuous Deployment for Kubernetes
chardet
Python character encoding detector
chronic_infection_python
A simple GUI that allows users to check whether mutations from a SARS-CoV-2 genome best fit a mutational distribution of genomes derived from global, chronic, or deer infections.
cmaple
MAximum Parsimonious Likelihood Estimation in C/C++
codespell
check code for common misspellings
conda-build
Commands and tools for building conda packages
electron
:electron: Build cross-platform desktop apps with JavaScript, HTML, and CSS
fasthtml
The fastest way to create an HTML app
fasthtml-example
Example fasthtml applications demonstrating a range of web programming techniques
gzip-feedstock
A conda-smithy repository for gzip.
hyper
A terminal built on web technologies
hyphy
HyPhy: Hypothesis testing using Phylogenies
iqtree2
NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org
language-formatters-pre-commit-hooks
Collection of custom pre-commit hooks.
lr_quant_benchmarks
A replicable and modular benchmark for long-read RNA transcript quantification methods
mermaid
Generation of diagrams like flowcharts or sequence diagrams from text in a similar manner as markdown
nbdev
Create delightful software with Jupyter Notebooks
oarfish
long read RNA-seq quantification
ospeak
CLI tool for running text through OpenAI Text to speech
peps
Python Enhancement Proposals
stats
macOS system monitor in your menu bar