corneliusroemer / seqs

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Translation helper

Run with:

snakemake -F

Config

To use translate different Nextclade datasets, configure via profiles/default/configfile.yaml or passing config options explicitly to the snakemake command.

Example:

s --config dataset_name=nextstrain/ebola/zaire dataset_server="https://raw.githubusercontent.com/nextstrain/nextclade_data/ebola/data_output" output_dir="ebola-zaire"

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