Cornelius Roemer's repositories
bioconda-recipes
Conda recipes for the bioconda channel.
compression_benchmark
Benchmarking fastq compression with generic (mature) compression algorithms
snakemake-boilerplate
Boilerplate for Snakemake workflow
actionlint
:octocat: Static checker for GitHub Actions workflow files
arrow-tools
A collection of handy CLI tools to convert CSV and JSON to Apache Arrow and Parquet
bioconda-utils
Utilities for building and managing bioconda recipes
dillinger
The last Markdown editor, ever.
gff-to-genbank
Convert GFF file to GenBank file format while extracting the sequences between the annotated regions
homebrew-core
🍻 Default formulae for the missing package manager for macOS
kind
Kubernetes IN Docker - local clusters for testing Kubernetes
llm
Access large language models from the command-line
polars-book
Book documentation of the Polars DataFrame library
polars-scripts
Collection of polars scripts
SARS2-mut-fitness
Observed substitution counts of SARS-CoV-2 compared to those expected under the mutation rates
snakemake-tips
General snakemake tips not covered in official docs
snipit
snipit: summarise snps relative to your reference sequence
sync-pre-commit-deps
Sync pre-commit hook dependencies based on other installed hooks
usher_wiki
docs holder for usher wiki
visidata
A terminal spreadsheet multitool for discovering and arranging data