corneliusroemer

bioconda-recipes

Conda recipes for the bioconda channel.

snakemake-boilerplate

Boilerplate for Snakemake workflow

arrow-tools

A collection of handy CLI tools to convert CSV and JSON to Apache Arrow and Parquet

brew

🍺 The missing package manager for macOS (or Linux)

clap

A full featured, fast Command Line Argument Parser for Rust

corneliusroemer

cvxopt-feedstock

A conda-smithy repository for cvxopt.

db-benchmark

reproducible benchmark of database-like ops

dillinger

The last Markdown editor, ever.

flu_frequencies

genofunc

homebrew-core

🍻 Default formulae for the missing package manager for macOS

homebrew-nextclade

mamba

The Fast Cross-Platform Package Manager

minimizer

Rust implementation of a minimizer index

miniwdl

Workflow Description Language developer tools & local runner

Morbidostat_phage

Code to run the morbidostat for my phage experiments.

nextflow

A DSL for data-driven computational pipelines

nipah

ov

🎑Feature-rich terminal-based text viewer. It is a so-called terminal pager.

polars-book

Book documentation of the Polars DataFrame library

polars-scripts

Collection of polars scripts

pyfastx

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

rbd-calculator

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

SARS-CoV-2

SARs-CoV-2 Primer schemes

seed-matching-experiment

Seed matching experiment for Nextclade

snakefmt

The uncompromising Snakemake code formatter

snakemake-tips

General snakemake tips not covered in official docs

snipit

snipit: summarise snps relative to your reference sequence