Cornelius Roemer's repositories
minimizer
Rust implementation of a minimizer index
Morbidostat_phage
Code to run the morbidostat for my phage experiments.
db-benchmark
reproducible benchmark of database-like ops
rust-bio
This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.
clap
A full featured, fast Command Line Argument Parser for Rust
seed-matching-experiment
Seed matching experiment for Nextclade
ov
🎑Feature-rich terminal-based text viewer. It is a so-called terminal pager.
snakefmt
The uncompromising Snakemake code formatter
nextflow
A DSL for data-driven computational pipelines
pyfastx
a python package for fast random access to sequences from plain and gzipped FASTA/Q files
SARS-CoV-2
SARs-CoV-2 Primer schemes
cvxopt-feedstock
A conda-smithy repository for cvxopt.
zoom-cli
Save and launch Zoom meetings from the command line.
covariants
Scripts to investigate the SUKS cluster
nextstrain-deploy
Deploy nextstrain builds from local/staging to staging/production
Specifications
GFF and GVF specification documents
fonts
Patched fonts for Powerline users.
RKI_Monkeypox
Web-Scraper for monkeypox cases in Germany
POUTINE
POUTINE: a next-generation homoplasy counting method for genome-wide association studies.
sphinx-markdown-tables
A markdown table plugin for Sphinx
SARS-CoV-2_variant-reports
Informal summaries of notable SARS-CoV-2 lineages
website-copy
A repository for exercism's website's copy
alignment-ref-construction
Creating alignment references in different coordinates
cov-spectrum-website
A web platform to detect and analyze variants of SARS-CoV-2