corneliusroemer

desh-data

Sequence lineage information extracted from RKI sequence data repo

covariants

Scripts to investigate the SUKS cluster

nextstrain-deploy

Deploy nextstrain builds from local/staging to staging/production

alignment-ref-construction

Creating alignment references in different coordinates

clap

A full featured, fast Command Line Argument Parser for Rust

corneliusroemer.github.io

cov-spectrum-website

A web platform to detect and analyze variants of SARS-CoV-2

cvxopt-feedstock

A conda-smithy repository for cvxopt.

db-benchmark

reproducible benchmark of database-like ops

fonts

Patched fonts for Powerline users.

minimizer

Rust implementation of a minimizer index

Morbidostat_phage

Code to run the morbidostat for my phage experiments.

nextflow

A DSL for data-driven computational pipelines

ov

🎑Feature-rich terminal-based text viewer. It is a so-called terminal pager.

POUTINE

POUTINE: a next-generation homoplasy counting method for genome-wide association studies.

pyfastx

a python package for fast random access to sequences from plain and gzipped FASTA/Q files

rbd-calculator

RKI_Monkeypox

Web-Scraper for monkeypox cases in Germany

RSV_nextclade_trial

rust-bio

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

rustlings

SARS-CoV-2

SARs-CoV-2 Primer schemes

SARS-CoV-2_variant-reports

Informal summaries of notable SARS-CoV-2 lineages

seed-matching-experiment

Seed matching experiment for Nextclade

snakefmt

The uncompromising Snakemake code formatter

Specifications

GFF and GVF specification documents

sphinx-markdown-tables

A markdown table plugin for Sphinx

variant-report

website-copy

A repository for exercism's website's copy

zoom-cli

Save and launch Zoom meetings from the command line.