coreywischmeyer

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Corey Wischmeyer's starred repositories

prettymaps

A small set of Python functions to draw pretty maps from OpenStreetMap data. Based on osmnx, matplotlib and shapely libraries.

Language:Jupyter NotebookAGPL-3.011082 81 82

onedrive

OneDrive Client for Linux

Language:DGPL-3.09753 113 1159

whereami

Uses WiFi signals :signal_strength: and machine learning to predict where you are

Language:PythonAGPL-3.05101 101 45

automl-gs

Provide an input CSV and a target field to predict, generate a model + code to run it.

Language:PythonMIT1844 61 31

awesome-ggplot2

A curated list of awesome ggplot2 tutorials, packages etc.

Generative-Art

A hub for all of my generative art projects

Language:Python791 29 1

Sniffles

Structural variation caller using third generation sequencing

Language:PythonNOASSERTION542 28 474

wtdbg2

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

Language:CGPL-3.0501 31 252

RagTag

Tools for fast and flexible genome assembly scaffolding and improvement

Language:PythonMIT457 8 181

mummer

Mummer alignment tool

Language:C++Artistic-2.0441 21 199

here

A simpler way to find your files

Language:RNOASSERTION410 9 71

stringtie

Transcript assembly and quantification for RNA-Seq

Language:C++MIT363 28 429

elprep

elPrep: a high-performance tool for analyzing sequence alignment/map files in sequencing pipelines.

Language:GoNOASSERTION285 20 64

ngmlr

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

Language:C++MIT285 22 98

merqury

k-mer based assembly evaluation

Language:ShellNOASSERTION275 12 130

quickmerge

A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.

Language:C++GPL-3.0198 12 70

vgp-assembly

VGP repository for the genome assembly working group

Language:ShellNOASSERTION185 26 23

paranoidscientist

Runtime software verification and automated testing for scientific software in Python

Language:PythonMIT91 4 1

arcs

🌈Scaffold genome sequence assemblies using linked or long read sequencing data

Language:C++GPL-3.090 25 105

synvisio

SynVisio is an interactive multiscale visualization tool that lets you explore the results of McScanX a popular synteny and collinearity detection toolkit.

Language:JavaScriptMIT78 4 18

FALCON-Phase

FALCON-Phase integrates PacBio long-read assemblies with Phase Genomics Hi-C data to create phased, diploid, chromosome-scale scaffolds

Language:CNOASSERTION72 10 59

tigmint

⛓ Correct misassemblies using linked AND long reads

Language:PythonGPL-3.054 18 53

SDA

Segmental Duplication Assembler (SDA).

Language:PythonMIT42 4 19

naaaavi

Naming avoiding ambiguity automatically assigning valid identifiers

Language:PythonMIT32 2 8

bam2fastq

Simple convertor from bam to FASTQ

Language:C++NOASSERTION25 7 4

SVhound

Language:Python9 2 2

sm_assemblies

Analysis of protein coding exons in single molecule assemblies

Language:Perl7 2 3

freezer_management

Database entry and visualization app for cell pastes

Language:R3 10

MCscanX2Band

Language:JavaMIT2 40

RaGOO

Fast Reference-Guided Scaffolding of Genome Assembly Contigs

Language:PythonMIT1 20