bcgsc / arcs

🌈Scaffold genome sequence assemblies using linked or long read sequencing data

bcgsc/arcs Issues

tigmint-make 'missing separator' error
Closed 9 months ago8
Understanding specific scaffolding output
Closed 9 months ago4
`arcs-long`/`arks-long` vs `LINKS`?
Closed a year ago2
Incorrect program call?
Closed a year ago6
`arcs-tigmint` and `arks-tigmint` struggle with input files outside working directory
Closed a year ago3
Can this software use HiC data, or need to use the sequencing technology mentioned in your paper?
Closed a year ago1
Parameters for PacBio HiFi data
Closed 2 years ago3
ARKS fails to create any links with a highly repetitive input
Closed 2 years ago4
fastq formatting barcodes in BX tag
Closed 2 years ago8
Parameters for corrected ONT reads
Closed 3 years ago2
arcs-long: tiny PE-pairs are produced
Closed 3 years ago3
unrecognized option '--fastq'
Closed 3 years ago3
arcs-make in bin
Closed 3 years ago2
Add optional dependency of pigz
Closed 3 years ago1
Scaffolding Expectations
Closed 3 years ago12
Running ARCS and ARKS
Closed 3 years ago2
Short read length question: can the tool accept 250?
Closed 3 years ago2
arcs-1.2.2: abyss-fixmate-ssq sometimes segfaults
Closed 3 years ago9
GCC version update
Closed 3 years ago1
About Running ARCS in default mode
Closed 3 years ago3
Feature request: include a gfa file in output
Closed 3 years ago6
Regarding the error info "File contains unpaired reads"
Closed 3 years ago7
No scaffolding
Closed 3 years ago10
Mapping using longranger
Closed 5 years ago3
scaffold headers are too long
Closed 4 years ago2
Sideloading a BAM
Closed 4 years ago4
Error ARCS: sequence with ID "X" empty
Closed 4 years ago7
formatting fastq data correctly
Closed 4 years ago3
ARCS finds 0 barcodes when using TELLSeq reads instead of Chromium reads
Closed 4 years ago3
Boost 1.58.0 address
Closed 4 years ago1
Number of Ns
Closed 4 years ago4
Alignment using longranger and variant calling best practices
Closed 4 years ago2
mapping with BWA versus LONGRANGER ALIGN
Closed 4 years ago4
no such file or directory: /tigmint-molecule
Closed 4 years ago14
question about the long ranger basic
Closed 4 years ago4
checkSignificance when second == 0?
Closed 5 years ago6
arcs dies with error: `@HD VN:1.3 SO:coordinate': No such file or directory
Closed 5 years ago5
arcs-make tigmint command not found
Closed 5 years ago7
Install arcs with error about gcc
Closed 5 years ago7
About contig length & Scaffold length
Closed 5 years ago2
arcs-tigmint error
Closed 5 years ago1
question about 'Barcode whitelist filtering'
Closed 5 years ago2
Error 11 when running arks + links pipeline
Closed 5 years ago9
question about the parameters -m and -d
Closed 5 years ago5
Too much data?
Closed 5 years ago4
LICENSE file missing
Closed 5 years ago1
It is the same readme file!
Closed 5 years ago4
arcs-make command format question
Closed 5 years ago1
Polyploid analysis
Closed 5 years ago1
Problems with arcs-make
Closed 5 years ago13