const-ae

ggsignif

Easily add significance brackets to your ggplots

ggupset

Combination matrix axis for 'ggplot2' to create 'UpSet' plots

glmGamPoi

Fit Gamma-Poisson Generalized Linear Models Reliably

lemur

Latent Embedding Multivariate Regression

linear_perturbation_prediction-Paper

sparseMatrixStats

Implementation of the matrixStats API for sparse matrices

pyLemur

A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.

transformGamPoi-Paper

transformGamPoi

Variance stabilizing transformation for Gamma Poisson distributed data

proDA

Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/

exactplot

Produce scientific figures in R that look exactly how you want

mixdir

Cluster high dimensional categorical datasets

einsum

Einstein Summation for Arrays in R

treelabel

Store and work with labels that exist in hierarchical relationships

ggbezier

Bezier curves for 'ggplot2'

EMBO-multi-omics-course

gggroupedscale

Grouped Discrete Scale for 'ggplot2'

lemur-Paper

Code to reproduce analysis in LEMUR paper

Multi-omics-Data-Integration-course

Temporary Repository for the EMBO 2024 Multi-Omics course

MyWorkflowManager

This is a simple self-written R workflow manager for slurm systems that I use to automate the submission of jobs

cae-quarto-helpers

CSAMA

Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology

ecosystem-packages

Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)

fullRankMatrix

This package will help users to create a full rank matrix out of their model matrix. It discovers linear dependent columns and then renames and removes columns to make the matrix full rank.

Huber-group-EMBL.github.io

Huber group public webpage

lemur.utils

R package with helper functions to process the output of lemur

shinyTreelabel

Companion package to treelabel to interactively explore datasets

single-cell-best-practices

https://www.sc-best-practices.org

single-cell-transformer-papers

SpatialData