const-ae / proDA

Protein Differential Abundance for Label-Free Mass Spectrometry https://const-ae.github.io/proDA/

const-ae/proDA Issues

Sigma is 0 when calculating hess_fnc
Closed 7 months ago3
constitutively missing peptides/proteins across "runs"
Updated 2 years ago1
NA dropout_curve parameters
Updated 2 years ago2
Pre-filtering steps and requirements per sample
Updated 2 years ago3
Equivalent of Fold-Change analysis?
Updated 2 years ago3
quick question: data with no replication
Closed 2 years ago4
different results for some proteins depending test used.
Updated 2 years ago
dist_approx() not stable
Updated 2 years ago
Can proDA be used for paired data?
Closed 3 years ago1
Why Intensity over iBAQ?
Updated 3 years ago2
Modelling repeated measurements in the presence of missing observations.
Closed 3 years ago10
Creating heatmap of protein expression across conditions with proDA package
Closed 3 years ago1
import_MaxQuant filter
Updated 4 years ago1
proDA not on CRAN anymore?
Closed 4 years ago1
model contrasts
Closed 4 years ago6
Replacing 0's by NA's on log transformed data
Closed 5 years ago7