comprna / CHEUI

Concurrent identification of m6A and m5C modifications in individual molecules from nanopore sequencing

comprna/CHEUI Issues

stoichiometry and probability columns in the solo output
Closed a month ago2
CHEUI_preprocess_m5C.py give error
Updated 2 months ago17
Problem with preprocessm6A
Updated 2 months ago1
Compatibility with the new direct RNA seq kit
Updated 2 months ago2
2 Questions about model 2 and python/c++ preprocess
Updated 4 months ago1
pickle data was truncated
Closed 5 months ago4
Do CHEUI models work on SARS-CoV-2 RNA modification detection?
Updated 5 months ago1
Understanding of the read-level prediction file output
Updated 6 months ago1
Do CHEUI models work on Bacterial RNA modification detection?
Updated 6 months ago1
Regarding prediction of stoichiometry
Updated 7 months ago
SQK-RNA004
Closed 8 months ago2
Low m5C modification site number overlapped with m5c-atlas database
Updated 9 months ago1
too much predicted m6a modification site
Closed 9 months ago2
Issue with the signal rejoining script and model 2 with the 4 dimensional issues
Updated 9 months ago3
CHEUI preprocess C++ compiling issue
Updated 9 months ago
Regarding CHEUI tool
Closed a year ago6
Column header _position_ in site_level_prediction
Updated a year ago6
CHEUI model 2: prediction of stoichiometry and modification probability at transcriptomic sites : Executed with Error
Updated a year ago5
Regarding output of the m6A probability and stoichiometry command
Updated a year ago3
multi-threading in running model 1
Updated a year ago
about reference transcriptome file and explanation of cheui output
Closed a year ago2
transpose expects a vector of size 3. But input(1) is a vector of size 4
Updated a year ago
The results of CHEUI-diff
Closed a year ago1
How to look for differential methylation sites
Closed a year ago4
how long will the preprocessing step take
Closed 2 years ago19
error while loading shared libraries: PicklingTools/libptools
Closed a year ago4
Could not run CHEUI_diffenrentialRNAMod.py
Closed a year ago2
incompatibility of the tensorflow version with the numpy version
Closed a year ago8
add temp directory for preprocessing
Closed a year ago2
Dockerized CHEUI
Updated a year ago1
Could not open model_kmer.csv
Closed 2 years ago1
How to enable GPU mode?
Closed 2 years ago3
What's the difference between m6A stoichiometry and probability?
Closed 2 years ago2
sample names in evenalign files
Closed 2 years ago1
Basecaller version
Closed 2 years ago4
Multithreading
Closed 2 years ago5
Sorting read prediction with reference id start with character smaller than K
Closed 2 years ago1
Model 2 error: "2 root error(s) found. (0) INVALID_ARGUMENT: input must be 4-dimensional[1,32,99]"
Closed 2 years ago24