comprna / METEORE

Automatic DNA methylation detection from nanopore tools and their consensus model

comprna/METEORE Issues

Coverage disappears in nanopore segment of tutorial
Updated 5 months ago
How to use `Combined model (multiple linear regression)`
Closed 10 months ago9
Question: Can the methylation tags of the nanopolish output files be viewed in igv/is there another recommended way to view the methylation tags?
Updated 10 months ago
[BUG] Incorrect score in script/format_megalodon.R
Closed a year ago1
Issue with downloading E.coli Nanopore data
Closed a year ago1
Error in Nanopolish Snakemake
Updated 2 years ago7
Question: Can this pipeline be used for bacterial methylation detectin.
Updated 2 years ago1
Guppy snakemake rocksdb error
Closed 2 years ago2
Deepsignal1 snakemake file - error with example data
Closed 2 years ago5
combination_model_train.py Label and Chr fields
Updated 2 years ago
Can Nanopolish snakemake call cpggpc pattern?
Closed 2 years ago1
Problems running the Nanopolish example: libcrypto.so.1.0.0:
Closed 2 years ago2
segmentation fault while runninc the combination_model_prediction (megalodon - nanopolish)
Closed 2 years ago3
Problem running DeepMod on exmaple data!!!
Closed 2 years ago1
da env
Closed 2 years ago
Megalodon Example : AssertionError: Alphabet (ACGT) and model number of modified bases (-41) do not agree.
Closed 2 years ago2
Issue with downloading E.coli Nanopore data
Closed 3 years ago2
weighted vs. unweighted average
Closed 3 years ago3
Stuck in nanopolish example
Closed 3 years ago2
combination_model_train.py doesn't work !
Closed 3 years ago5
It's just those two runs. You'll have to uncompress the .tar.gz file.
Closed 3 years ago4
Hello,professor！I can't find .fast5 which contained in dataset1&dataset2
Closed 3 years ago1
per-site prediction from combined model format
Closed 3 years ago5
mamba env create guppy doesn't work
Closed 3 years ago1
combination model
Closed 3 years ago1
tombo snakemake
Closed 3 years ago3
module loading error - combination_model_prediction.py
Closed 3 years ago4
Fail with Nanopolish pipeline
Closed 4 years ago2
guppy snakemake rocksdb error
Closed 4 years ago2
Nanopolish snakemake pipeline installation error
Closed 4 years ago3
Error in rule calculate_frequency some suggestions
Closed 4 years ago1
Module Not Found Error: import in call_modification_frequency.py
Closed 4 years ago2