Connectivity Map at the Broad Institute

cmapPy

Assorted tools for interacting with .gct, .gctx files and other Connectivity Map (Broad Institute) data/tools

cmapR

Tools for manipulating annotated data matrices

morpheus.js

JavaScript matrix visualization and analysis

lincs-workshop-2020

CMap Notebooks for LINCS 2020 Workshop

cmapM

Connectivity Map analysis in MATLAB

morpheus.R

R interface to morpheus.js heatmap widget

psp

Python scripts for data processing and analysis of P100 and GCP data

cmapBQ

dockerized_mts

merino

Pre-publication data flow for PRISM multiplex cell viability assay

morpheus-export

export static heat maps using Morpheus.js

sushi

Data Processing Pipeline for PRISM Sequencing

cmap-sig-tools

Reference documentation and usage notes for core CMap tools.

CTG_pipeline

cup

QC module for Luminex based PRISM data

adc-white-paper

CTE

What the Package Does (One Line, Title Case)

ctg

Sync and sort data for use with the CTG app

cup_streamsync

Streamsync version of cup app

deconv

Repo for paper: "Improving Deconvolution Methods in Biology"

demo-portal-logn

gene_deconvolution_challenge

Source code for the top finishers from the CMap Gene Deconvolution challenge

lincs-cell-painting

Processed Cell Painting Data for the LINCS Drug Repurposing Project

mts_biomarker

panel

QC app implemented in panel

pestle_tools

SigTools in Python

prism_lumitracker

Updated version of lumitracker qc figure generation for PRISM

sig_xicon

sig_xicon jobs on aws batch

slice-reports

submission_hub

HTML/CSS of new design to be used in clue