cmap / deconv

Repo for paper: "Improving Deconvolution Methods in Biology"

Geek Repo:Geek Repo

Github PK Tool:Github PK Tool

Overview

This repository contains all files needed to reproduce the results presented in the paper Improving Deconvolution Methods in Biology through Open Innovation Competitions: An Application to the Connectivity Map Andrea Blasco, Ted Natoli, Michael G. Endres, Rinat A. Sergeev, Steven Randazzo, Jin H. Paik, N. J. Maximilian Macaluso, Rajiv Narayan, Xiaodong Lu, David Peck, Karim R. Lakhani, Aravind Subramanian; bioRxiv 2020.01.10.897363; doi: https://doi.org/10.1101/2020.01.10.897363

  • The data/ folder contains all the data files
  • The analysis/ folder contains all R scripts needed to reproduce all the figures and tables
  • contestant_writeups/ folder contains verbal description of the winning algorithms as submitted by the competitors

About

Repo for paper: "Improving Deconvolution Methods in Biology"


Languages

Language:R 60.8%Language:TeX 37.3%Language:Makefile 1.9%