Recreate p_ctg from p_utg

[diego-rt]

Hello,

I'm trying to curate the assembly produced by hifiasm by reassembling the reads at the assembly tips with different parameters and assemblers. This would be bit more efficient if I could edit the assembly graph (manually add/remove or update nodes and edges), and recreate the contigs as hifiasm(UL) does. Do you by any chance have any code that you could share that could take the p_utg from the UL pipeline as input and output the primary p_ctg/hap1/hap2 graphs?

Thank you so much in advance!

[diego-rt]

@chhylp123 @lh3 Or alternatively, if hifiasm could output the order, orientation and coordinates of the unitigs used to generate each contig/haplotig, it would be super helpful for curation. In other words, similar to the 'A' lines in the current GFA but with unitigs rather than reads.

Thanks a lot in advance and sorry for the shameless feature request...

[chhylp123]

@diego-rt Sorry for the late reply since I was quite busy this month. I will add this very soon.

[diego-rt]

Amazing, thank you so much @chhylp123 !!