cflerin

Ubiquiti

scanpy

Single-cell analysis in Python. Scales to >1M cells.

garnett

Automated cell type classification

SingleR

SingleR: Single-cell RNA-seq cell types Recognition (legacy version)

bigSCale2

Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data

simple_site

Minimal tutorial on making a simple website with GitHub Pages

SINGE

Gene regulatory network reconstruction from pseudotemporal single-cell gene expression data

scenic-nf

DEPRECATED | pySCENIC pipeline implemented in Nextflow using containers

rosetta-pipeline

A showcase and characterisation of pipeline frameworks (aka workflow managers)

easy-rsa

easy-rsa - Simple shell based CA utility

flattened

Solarized, without the bullshit.

loompy

Python implementation of the Loom file format - http://loompy.org

crossstitch

Code for phasing SVs with SNPs

Amethyst

Automatic tiling window manager for macOS à la xmonad.

dynverse

A set of tools supporting the development, execution, and benchmarking of trajectory inference methods. 🌍

google-drive-ocamlfuse

FUSE filesystem over Google Drive

checkVCF

Sanity check Variant Call Format (VCF) files.

comma-chameleon

A desktop CSV editor for data publishers

pecaller

map and call next generation genomic sequencing

TicketToRide

Python simulation of the Ticket To Ride board game.

Nvim-R

Vim plugin to work with R

Vim-R-plugin

Plugin to work with R

vim-slime

A vim plugin to give you some slime. (Emacs)

Vundle.vim

Vundle, the plug-in manager for Vim

CGmix

Crossover and Gene conversion detection from adMIXed population genetic data

syncthing

Open Source Continuous File Synchronization