Chris C Flerin's repositories
arboreto
A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
auto_transcode
Monitor a directory for new video files ending in (mov|MOV), transcode and normalize audio, moving the output to a new location.
bap
Bead single-cell atac processing
bigSCale2
Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data
dog_recombination
Supporting data for doi:10.1534/g3.116.034678: A Pedigree-Based Map of Recombination in the Domestic Dog Genome
bioInfResources
A collection of random bioinformatics resources
boggleSolver
R script to solve Boggle boards.
callCrossoversFromMerlinFlow
Identify recombination crossovers from MERLIN's haplotyping flow output.
interference
MATLAB code for estimating crossover interference under the Housworth-Stahl model.
nf-core-scenic
A Nextflow pipeline to perform SCENIC analysis on single-cell RNAseq data
pySCENIC
pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene regulatory networks and cell types from single-cell RNA-seq data.
readthedocs.org
The source code that powers readthedocs.org
scanpy-images
Docker and Singularity images for Scanpy