Giters
VIB-SingleCell-NF (vib-singlecell-nf)

VIB-SingleCell-NF

vib-singlecell-nf

Geek Repo

Pipelines for single-cell data in Nextflow DSL2. Developed and maintained by the Stein Aerts lab, Yvan Saeys lab, and Janssen Pharmaceutica.

Home Page:https://aertslab.org/

Github PK Tool:Github PK Tool

VIB-SingleCell-NF's repositories

vsn-pipelines

A repository of pipelines for single-cell data in Nextflow DSL2

Language:NextflowLicense:GPL-3.0Stargazers:75Issues:12Issues:204

vsn-pipelines-examples

Configs and results for example data

License:GPL-3.0Stargazers:4Issues:4Issues:2

scanpy

A repository for the scanpy module of the vib-singlecell-nf pipeline

Language:NextflowStargazers:3Issues:4Issues:12

popscle

A repository for the popscle module of the vib-singlecell-nf pipeline

Language:NextflowStargazers:1Issues:4Issues:3

scrublet

A repository for the scrublet module of the vib-singlecell-nf pipeline

Language:NextflowStargazers:1Issues:4Issues:2

template

A template repository for adding new tools to VIB-SingleCell-NF

Language:NextflowLicense:GPL-3.0Stargazers:1Issues:4Issues:0

picard

A repository for the picard module of the vib-singlecell-nf pipeline

Language:NextflowStargazers:0Issues:2Issues:0

sratoolkit

A repository for the sratoolkit module of the vib-singlecell-nf pipeline

Language:NextflowStargazers:0Issues:2Issues:1

star

A repository for the star module of the vib-singlecell-nf pipeline

Language:NextflowStargazers:0Issues:2Issues:1

trimgalore

A repository for the Trim Galore module of the vib-singlecell-nf pipeline

Language:NextflowStargazers:0Issues:4Issues:0

archr

A repository for the ArchR module of the vib-singlecell-nf pipeline

Language:RStargazers:0Issues:4Issues:0

bap

A repository for the BAP module of the vib-singlecell-nf pipeline

Language:NextflowStargazers:0Issues:4Issues:0

bwamaptools

A repository for the bwa mapping module of the vib-singlecell-nf pipeline

Language:NextflowLicense:GPL-3.0Stargazers:0Issues:4Issues:0

celda

A repository for the celda module of the vib-singlecell-nf pipeline

Language:NextflowStargazers:0Issues:4Issues:0

cellranger

A repository for the cellranger module of the vib-singlecell-nf pipeline

Language:NextflowStargazers:0Issues:3Issues:1

cellranger-atac

A repository for the cellranger-atac module of the vib-singlecell-nf pipeline

Language:NextflowStargazers:0Issues:4Issues:0

directs

Language:PythonStargazers:0Issues:4Issues:0

dropletutils

A repository for the dropletutils module of the vib-singlecell-nf pipeline

Language:RStargazers:0Issues:0Issues:0

dropseqtools

A repository for the dropseqtools module of the vib-singlecell-nf pipeline

Language:NextflowStargazers:0Issues:2Issues:0

edirect

A repository for the edirect module of the vib-singlecell-nf pipeline

Language:NextflowStargazers:0Issues:2Issues:0

fastp

A repository for the fastp module of the vib-singlecell-nf pipeline

Language:NextflowStargazers:0Issues:0Issues:0

flybaser

Language:NextflowStargazers:0Issues:3Issues:0

harmony

A repository for the harmony module of the vib-singlecell-nf pipeline

Language:NextflowStargazers:0Issues:4Issues:0

pcacv

A repository for the pcacv module of the vib-singlecell-nf pipeline

Language:RStargazers:0Issues:3Issues:6

pycistopic

A repository for the pycisTopic module of the vib-singlecell-nf pipeline

Language:PythonStargazers:0Issues:4Issues:0

scenic

A repository for the scenic module of the vib-singlecell-nf pipeline

Language:PythonStargazers:0Issues:3Issues:4

singlecelltoolkit

A repository for the single_cell_toolkit module of the vib-singlecell-nf pipeline

Language:DockerfileStargazers:0Issues:4Issues:0

sinto

A repository for the Sinto module of the vib-singlecell-nf pipeline

Language:NextflowStargazers:0Issues:4Issues:0

snaptools

A repository for the SnapTools module of the vib-singlecell-nf pipeline

Language:NextflowLicense:GPL-3.0Stargazers:0Issues:4Issues:0

soupx

A repository for the soupx module of the vib-singlecell-nf pipeline

Language:NextflowStargazers:0Issues:4Issues:0