CatalystNeuro's repositories
roiextractors
Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by SpikeInterface.
tqdm_publisher
Subscribe to updates from tqdm progress bars with arbitrary callback functions.
vame-desktop
A desktop application for the Variational Animal Motion Encoding project.
dandi_s3_log_parser
S3 log parsing for the DANDI Archive.
format-support-table
A summary of format support in the NWB ecosystem
ndx-fiber-photometry
This is an NWB extension for storing fiber photometry recordings and associated metadata.
stratneuro_2024
Material for StratNeuro 2024 workshop
constantinople-lab-to-nwb
NWB Conversion project for the Constantinople lab at NYU Center for Neural Science.
dombeck-lab-to-nwb
NWB Conversion project for the Dombeck lab at Northwestern University.
GuPPy
Guided Photometry Analysis in Python, a free and open-source FP analysis tool.
higley-lab-to-nwb
NWB Conversion project for the Higley lab
howe-lab-to-nwb
NWB Conversion project for the Howe lab at Boston University.
leifer_lab_to_nwb
Conversion scripts for the Leifer lab. Includes the publication Neural signal propagation atlas of Caenorhabditis elegans (Nature, 2023).
ndx-binned-spikes
NWB extension to store binned spikes (e.g. a non averaged PSTH) with respect to an time events
ndx-microscopy
An enhancement to core NWB schema types related to microscopy data.
ndx-patterned-ogen
patterned (holographic) optogenetic extension to NWB standard
ndx-subjects
An NWB extension for custom species metadata.
nwb_hackathons
Repository for collecting materials from nwb hackathons
nwbinspector
Tool to help inspect NWB files for compliance with NWB Best Practices
reimer-arenkiel-lab-to-nwb
Reimer-Arenkiel lab conversion to NWB
staged-extensions
A place to submit NWB Extensions for registration in the official NDX Catalog