CatalystNeuro's repositories
roiextractors
Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by SpikeInterface.
ontology-matching-service
Ontology matching service based on LLMs for facilitating the extraction of scientific metadata from ontologies
ndx-miniscope
Neurodata Without Borders extension for metadata relevant for miniscope acquisition
spikeinterface
A Python-based module for creating flexible and robust spike sorting pipelines.
tqdm_publisher
Subscribe to updates from tqdm progress bars with arbitrary callback functions.
cookiecutter-my-lab-to-nwb-template
The standard cookiecutter template for all lab-specific NWB conversions.
ndx-fiber-photometry
This is an NWB extension for storing fiber photometry recordings and associated metadata.
si-dendro-apps
SpikeInterface Apps for Dendro
vame-desktop
A desktop application for the Variational Animal Motion Encoding project.
.github
Company-wide documentation of practices, protocols, policies, and processes.
dombeck-lab-to-nwb
NWB Conversion project for the Dombeck lab at Northwestern University.
higley-lab-to-nwb
NWB Conversion project for the Higley lab
howe-lab-to-nwb
NWB Conversion project for the Howe lab at Boston University.
jazayeri-lab-to-nwb
Collection of tools and scripts for converting data from the Jazayeri lab to NWB format.
leifer_lab_to_nwb
Conversion scripts for the Leifer lab. Includes the publication Neural signal propagation atlas of Caenorhabditis elegans (Nature, 2023).
mousev1-to-nwb
NWB Conversion project for the Adesnik lab at UC Berkeley.
ndx-patterned-ogen
patterned (holographic) optogenetic extension to NWB standard
raw_s3_log_parser
Parse raw S3 logs.
reimer-arenkiel-lab-to-nwb
Reimer-Arenkiel lab conversion to NWB
stratneuro_2024
Material for StratNeuro 2024 workshop
turner-lab-to-nwb
NWB Conversion project for the Turner lab at the University of Pittsburgh.
tye-lab-to-nwb
NWB Conversion project for the Tye lab at the Salk Institute.
visual-coding-to-nwb-v2
Conversion of old v1 NWB files from https://registry.opendata.aws/allen-brain-observatory/ to v2 so they can be uploaded to DANDI.
wormdatamodel
Data model for whole brain recordings