CatalystNeuro's repositories
roiextractors
Python-based module for extracting from, converting between, and handling optical imaging data from several file formats. Inspired by SpikeInterface.
ontology-matching-service
Ontology matching service based on LLMs for facilitating the extraction of scientific metadata from ontologies
nwbwidgets
Explore the hierarchical structure of NWB 2.0 files and visualize data with Jupyter widgets.
cookiecutter-my-lab-to-nwb-template
The standard cookiecutter template for all lab-specific NWB conversions.
IBL-to-nwb
Conversion of IBL data to NWB format.
vame-desktop
A desktop application for the Variational Animal Motion Encoding project.
dandi_s3_log_parser
S3 log parsing for the DANDI Archive.
cai-lab-to-nwb
NWB Conversion project for the Cai lab
constantinople-lab-to-nwb
NWB Conversion project for the Constantinople lab at NYU Center for Neural Science.
dandi.github.io
Website code for DANDI Project
hdmf
The Hierarchical Data Modeling Framework
hdmf-zarr
Zarr I/O backend for HDMF
higley-lab-to-nwb
NWB Conversion project for the Higley lab
howe-lab-to-nwb
NWB Conversion project for the Howe lab at Boston University.
leifer_lab_to_nwb
Conversion scripts for the Leifer lab. Includes the publication Neural signal propagation atlas of Caenorhabditis elegans (Nature, 2023).
ndx-binned-spikes
NWB extension to store binned spikes (e.g. a non averaged PSTH) with respect to an time events
ndx-microscopy
An enhancement to core NWB schema types related to microscopy data.
ndx-ophys-devices
This is an NWB extension for storing metadata of devices used in optical experimental setup (microscopy, fiber photometry, optogenetic stimulation etc.)
ndx-structured-behavior
An NWB extension for storing structured behavior programs and data, such as from BAABL/BEADL
ndx-subjects
An NWB extension for custom species metadata.
nwb-schema
Data format specification schema for the NWB neurophysiology data format