CatalystNeuro's repositories
nwbwidgets
Explore the hierarchical structure of NWB 2.0 files and visualize data with Jupyter widgets.
ndx-miniscope
Neurodata Without Borders extension for metadata relevant for miniscope acquisition
spikeinterface
A Python-based module for creating flexible and robust spike sorting pipelines.
2023-ecosystem-paper
WIP paper covering ecosystem from neo+roiextractors to NeuroConv to GUIDE
python-neo
Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats
jaeger-lab-to-nwb
Convert Jaeger lab data to NWB format.
jazayeri-lab-to-nwb
Collection of tools and scripts for converting data from the Jazayeri lab to NWB format.
murthy-lab-to-nwb
NWB Conversion project for Mala Murthy's lab
ndx-binned-spikes
NWB extension to store binned spikes with respect to an event (e.g. a non averaged PSTH)
ndx-facemap-motionsvd
extension to store the motion SVD output from FaceMap software
ndx-holographic-stimulation
The extension of OptogeneticSeries to include 3D geometrical stimulation pattern
ndx-photometry
photometry extension for nwb
ndx-pinto-metadata
The NWB extension for storing ViRMEN experimental metadata for the Pinto lab.
ndx-turner-metadata
The NWB extension for storing Turner lab specific metadata
ODIN-23-summary-paper
A social commentary paper summarizing the ODIN 2023 symposium and its discussions.
pinto-lab-to-nwb
NWB Conversion project for the Pinto lab at the Northwestern University.
staged-extensions
A place to submit NWB Extensions for registration in the official NDX Catalog
turner-lab-to-nwb
NWB Conversion project for the Turner lab at the University of Pittsburgh.
tye-lab-to-nwb
NWB Conversion project for the Tye lab at the Salk Institute.
visual-coding-to-nwb-v2
Conversion of old v1 NWB files from https://registry.opendata.aws/allen-brain-observatory/ to v2 so they can be uploaded to DANDI.