CatalystNeuro's repositories
ontology-matching-service
Ontology matching service based on LLMs for facilitating the extraction of scientific metadata from ontologies
cookiecutter-my-lab-to-nwb-template
The standard cookiecutter template for all lab-specific NWB conversions.
spikeinterface
A Python-based module for creating flexible and robust spike sorting pipelines.
format-support-table
A summary of format support in the NWB ecosystem
python-neo
Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats
si-dendro-apps
SpikeInterface Apps for Dendro
stratneuro_2024
Material for StratNeuro 2024 workshop
dombeck-lab-to-nwb
NWB Conversion project for the Dombeck lab at Northwestern University.
GuPPy
Guided Photometry Analysis in Python, a free and open-source FP analysis tool.
mousev1-to-nwb
NWB Conversion project for the Adesnik lab at UC Berkeley.
murthy-lab-to-nwb
NWB Conversion project for Mala Murthy's lab
ndx-facemap-motionsvd
extension to store the motion SVD output from FaceMap software
ndx-patterned-ogen
patterned (holographic) optogenetic extension to NWB standard
nwb_hackathons
Repository for collecting materials from nwb hackathons
nwbinspector
Tool to help inspect NWB files for compliance with NWB Best Practices
staged-extensions
A place to submit NWB Extensions for registration in the official NDX Catalog
turner-lab-to-nwb
NWB Conversion project for the Turner lab at the University of Pittsburgh.
tye-lab-to-nwb
NWB Conversion project for the Tye lab at the Salk Institute.
visual-coding-to-nwb-v2
Conversion of old v1 NWB files from https://registry.opendata.aws/allen-brain-observatory/ to v2 so they can be uploaded to DANDI.
wormdatamodel
Data model for whole brain recordings