Brian M. Schilder's repositories
ThreeWayTest
Summary statistics-based association test for identifying the pleiotropic effects with set of genetic variants
anndataR
AnnData interoperability in R
BiocStickers
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
BiocWorkingGroups
Bioconductor working group guidelines. Also, a list of active, suggested, and inactive working groups for bioconductor for the community to volunteer to be apart of. The community is also welcome to suggest new working groups.
BMSchilder
Professional website for Brian M. Schilder
BuenColors
R package of colors for the Buenrostro Lab
configs
Config files used to define parameters specific to compute environments at different Institutions
EWCE
Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.
gcaer
R package interface to GCAE
Ilona_thesis
Figures for Ilona's thesis.
lemur
Latent Embedding Multivariate Regression
MACSr
MACS3 R/BioC wrapper
monarchr
R package for easy access, manipulation, and analysis of Monarch KG data
ormr
Work with Python installed at a custom location
pals
Color Palettes and Palette Evaluation Tools
quick-add-github-issue-browser-extension
Quickly add GitHub issues direct from a browser button
Rbowtie2
Bioconductor package: an R wrapper for Bowtie2 and AdapterRemoval
rphylopic
Get silhouettes of organisms from Phylopic.
SATURN
SATURN: Uniting Single-cell Gene Expressions with Protein Sequences for Cross-Species Integration
signac
R toolkit for the analysis of single-cell chromatin data
taxize
A taxonomic toolbelt for R
UCE
UCE is a zero-shot foundation model for single-cell gene expression data