bschilder

github-trends

🚀 Level up your GitHub profile readme with customizable cards including LOC statistics!

slack

Bring your code to the conversations you care about with the GitHub and Slack integration

action-tmate

Debug your GitHub Actions via SSH by using tmate to get access to the runner system itself.

keras-core

A multi-backend implementation of the Keras API, with support for TensorFlow, JAX, and PyTorch.

torch

R Interface to Torch

PrimeKG

Precision Medicine Knowledge Graph (PrimeKG)

free-disk-space

:octocat:⚙️🗑️ A GitHub Action to free disk space on an Ubuntu runner.

taxize

A taxonomic toolbelt for R

textnets

R package to perform automated text analysis using network techniques

linkedin-api-python-client

Official Python client library for LinkedIn APIs

UCE

UCE is a zero-shot foundation model for single-cell gene expression data

kgx

KGX is a Python library for exchanging Knowledge Graphs

gwasrapidd

gwasrapidd: an R package to query, download and wrangle GWAS Catalog data

TileDB-SOMA

Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.

issues-calendar-for-github-projects

A tool to view GitHub Project Issues in a calendar view.

rworkflows

Continuous integration for R packages. 🔀 Automates testing ✅, documentation website building 📦, & containerised deployment 🐳.

Rdimtools

Dimension Reduction and Estimation Methods

OnClass

Single cell typing based on cell ontology

ubergraph

Integrated OBO ontology store

Orphadata_aggregated

Provided files are a partial extraction of the Orphanet knowledge base on Rare Diseases

MAYA

gwas-sumstats-harmoniser

GWAS Summary Statistics Data Harmonisation

PDGrapher

Combinatorial prediction of therapeutic perturbations using causally-inspired neural networks

simona

Semantic Similarity in Bio-Ontologies

rols

An R package to query EBI's Ontology Lookup Service (OLS)

BiocWorkingGroups

Bioconductor working group guidelines. Also, a list of active, suggested, and inactive working groups for bioconductor for the community to volunteer to be apart of. The community is also welcome to suggest new working groups.

monarchr

R package for easy access, manipulation, and analysis of Monarch KG data

scOntoMatch

scOntoMatch is an R package which unifies ontology annotation of scRNA-seq datasets to make them comparable across studies

rphenoscape

R package to make phenotypic traits from the Phenoscape Knowledgebase available from within R.

biocBiocypher

Exploratory interfaces from Bioconductor to Biocypher