boulund

phaster_scripts

Small utility script to submit genomes to PHASTER for phage detection

adapter_benchmark

Benchmarking adapter and quality trimming tools

TIGRFAM_scripts

Small utility scripts to work with TIGRFAMs

adventofcode

Toying with the problems from AdventOfCode.com

tcup

Typing and Characterization using Proteotyping

airflow

Apache Airflow - A platform to programmatically author, schedule, and monitor workflows

amrplusplus_v2

MEGARes and AmrPlusPlus - A comprehensive database of antimicrobial resistance genes and user-friendly pipeline for analysis of high-throughput sequencing data

blat-parser

c3se-run-parallel

human_removal_benchmark

Comparing methods for removing human sequences from metagenomes

krakenuniq

🐙 KrakenUniq: Metagenomics classifier with unique k-mer counting for more specific results

metaWRAP

MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

nCoV_Meta

Pipeline for HCoV-19 genome analyzing

proteinvoids-langlet

An exact method for finding voids within macromolecules using an implementation of Langlet's method (http://scripts.iucr.org/cgi-bin/paper?S0021889877012734)

proteotyping

proteotyping-AR

proteotyping-bacterial-cultures-mixtures

proteotyping-in-silico

proteotyping-leave-one-out

proteotyping-py27

q2-sidle

A QIIME 2 implementation of SMURF

query-ratsit

restic-backup

Simple Restic backup configuration for Debian-based home server

setop

Set operations on text files

stag-mwc_test_data

Test data for StaG-mwc

SUPER-FOCUS

A tool for agile functional analysis of shotgun metagenomic data

tcup-mixes

tparty

Proteotyping workflow using TCUP

ttt-genomes-comparison