Comparing BBMap to Bowtie2 for removal of host contamination in human microbiome shotgun sequencing data.
CPU/mem
bbmap.fecal_200__V300019092_L01_1.txt
s h:m:s max_rss max_vms max_uss max_pss io_in io_out mean_load
11741.9862 3:15:41 19936.88 107738.37 19926.11 19930.88 25452.21 32106.87 0.00
bbmap.vag_200__V300019092_L01_2.txt
s h:m:s max_rss max_vms max_uss max_pss io_in io_out mean_load
29994.1121 8:19:54 21317.20 112711.51 21316.31 21316.37 15782.80 21128.40 0.00
bmtagger.fecal_200__V300019092_L01_1.txt
s h:m:s max_rss max_vms max_uss max_pss io_in io_out mean_load
18143.8568 5:02:23 8196.92 36763.13 8193.75 8193.80 48319.51 101098.27 0.00
bmtagger.vag_200__V300019092_L01_2.txt
s h:m:s max_rss max_vms max_uss max_pss io_in io_out mean_load
11778.1210 3:16:18 8196.92 36763.13 8193.13 8193.49 63719.35 64469.14 0.00
bowtie2.fecal_200__V300019092_L01_1.txt
s h:m:s max_rss max_vms max_uss max_pss io_in io_out mean_load
17687.8932 4:54:47 3438.63 5017.18 3427.23 3428.95 9035.55 110415.20 0.00
bowtie2.vag_200__V300019092_L01_2.txt
s h:m:s max_rss max_vms max_uss max_pss io_in io_out mean_load
36815.6363 10:13:35 3518.61 5017.18 3510.13 3510.42 603.71 89250.04 0.00
Performance
kraken2/bbmap.fecal_200__V300019092_L01_1.human.kreport
94.74 214697 0 F 9604 Hominidae
kraken2/bbmap.fecal_200__V300019092_L01_1.kreport
0.11 134871 0 F 9604 Hominidae
kraken2/bbmap.vag_200__V300019092_L01_2.human.kreport
99.47 153230411 0 F 9604 Hominidae
kraken2/bbmap.vag_200__V300019092_L01_2.kreport
60.96 3461241 0 F 9604 Hominidae
kraken2/bmtagger.fecal_200__V300019092_L01_1.kreport
0.09 102484 0 F 9604 Hominidae
kraken2/bmtagger.vag_200__V300019092_L01_2.kreport
8.96 204487 0 F 9604 Hominidae
kraken2/bowtie2.fecal_200__V300019092_L01_1.human.kreport
98.80 104459 0 F 9604 Hominidae
kraken2/bowtie2.fecal_200__V300019092_L01_1.kreport
0.12 143242 0 F 9604 Hominidae
kraken2/bowtie2.vag_200__V300019092_L01_2.human.kreport
99.79 75052857 0 F 9604 Hominidae
kraken2/bowtie2.vag_200__V300019092_L01_2.kreport
71.48 5356010 0 F 9604 Hominidae