ValueError on head-neck-pet-ct AutoPipeline demo
skim2257 opened this issue · comments
Sejin Kim commented
Error when running examples/process_quebec.sh
Processes two patient samples in: https://github.com/bhklab/tcia_samples/Head-Neck-PET-CDT
Traceback (most recent call last):
File "/cluster/home/sejinkim/pkgs/imgtools/imgtools/autopipeline.py", line 205, in <module>
pipeline.process_one_subject(subject_id)
File "/cluster/home/sejinkim/pkgs/imgtools/imgtools/autopipeline.py", line 112, in process_one_subject
self.graph.loc[subject_id, f"size_{output_stream}"] = image.GetSize()
File "/cluster/home/sejinkim/miniconda3/envs/imgtools/lib/python3.8/site-packages/pandas/core/indexing.py", line 692, in __setitem__
iloc._setitem_with_indexer(indexer, value, self.name)
File "/cluster/home/sejinkim/miniconda3/envs/imgtools/lib/python3.8/site-packages/pandas/core/indexing.py", line 1635, in _setitem_with_indexer
self._setitem_with_indexer_split_path(indexer, value, name)
File "/cluster/home/sejinkim/miniconda3/envs/imgtools/lib/python3.8/site-packages/pandas/core/indexing.py", line 1688, in _setitem_with_indexer_split_path
raise ValueError(
ValueError: Must have equal len keys and value when setting with an iterable
Steps to reproduce:
- clone
master
branch - sh examples/process_quebec.sh