Benjamin Rombaut's repositories
spatialdata-plot
Static plotting for spatialdata
ecosystem-packages
Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
spatialdata
Modular storage and efficient manipulation of spatial multimodal molecular data in Python
ome-zarr-py
Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
configs
Config files used to define parameters specific to compute environments at different Institutions
mcmicro
An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
hydra
Hydra is a framework for elegantly configuring complex applications
itk-vtk-viewer
2D / 3D web image, mesh, and point set viewer using itk-wasm and vtk.js
SpaceHack2022-Xenium
Our team work on Xenium data for the SpaceHack 2022
hyperfine
A command-line benchmarking tool
FlowSOM
FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data
deep-learning-biology
This repository contains the notebooks for the exercise sessions of the VIB Deep Learning for Biology workshop
thesis_supplementary
Supplementary files to thesis.
pyspark_blsspeller
Discovery of regulatory elements in related genomes using Apache Spark
openapi
OpenAPI Specification (OAS) for the Vatstack API.
nextflow
A DSL for data-driven computational pipelines
act_base
local Docker image for act
bioconda-recipes
Conda recipes for the bioconda channel.
aikiknow
Aikido app using Polymer Starter Kit 2
Nictiz-Snowstorm
Modified docker build package for building and deploying snowstorm and elasticsearch containers. Also contains examples of dockerized python ingest scripts for loading releases.
Simple-Jekyll-Search
A JavaScript library to add search functionality to any Jekyll blog.
openconnect-gui-menu-bar
OpenConnect Menu Bar - Connect/Disconnect/Status - for Mac OS X
webdev2data
Publieke data-repository voor practicum 2 van webdev