Benjamin Rombaut's starred repositories
techniques
Techniques for deep learning with satellite & aerial imagery
numpydantic
Type and shape validation and serialization for numpy arrays in pydantic models
awesome-biological-visualizations
A list of web-based interactive biological data visualizations.
multiview-stitcher
A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
core-bioimage-io-python
Python libraries for loading, running and packaging bioimage.io models
Mixture-Models
A python package for fitting a wide variety of Mixture Models
FriendsDontLetFriends
Friends don't let friends make certain types of data visualization - What are they and why are they bad.
color_jitter
Using color jitter to distinguish individuals in categorically colored visualizations
pylabeladjust
A small python port of Gephi's Label-Adjust algorithm. Makes labels in matplotlib-plots, or more generally, rectangles, not overlap.
Awesome-Zarr
🎀 Awesome Zarr resources
open-webui
User-friendly WebUI for LLMs (Formerly Ollama WebUI)
ome-zarr-image-analysis-nextflow
Basic example of using OME-Zarr in a Nextflow pipeline
threadpoolctl
Python helpers to limit the number of threads used in native libraries that handle their own internal threadpool (BLAS and OpenMP implementations)
napari-cell-gater
A napari plugin for cell marker gating.
promptbase
All things prompt engineering
biochatter
Backend library for conversational AI in biomedicine
inference
Replace OpenAI GPT with another LLM in your app by changing a single line of code. Xinference gives you the freedom to use any LLM you need. With Xinference, you're empowered to run inference with any open-source language models, speech recognition models, and multimodal models, whether in the cloud, on-premises, or even on your laptop.