Benjamin Rombaut's repositories
pyspark_blsspeller
Discovery of regulatory elements in related genomes using Apache Spark
bioconda-recipes
Conda recipes for the bioconda channel.
deep-learning-biology
This repository contains the notebooks for the exercise sessions of the VIB Deep Learning for Biology workshop
configs
Config files used to define parameters specific to compute environments at different Institutions
ecosystem-packages
Registry for scverse ecosystem packages (https://scverse.org/packages/#ecosystem)
FlowSOM
FlowSOM algorithm in Python, using self-organizing maps and minimum spanning tree for visualization and interpretation of cytometry data
hydra
Hydra is a framework for elegantly configuring complex applications
hyperfine
A command-line benchmarking tool
itk-vtk-viewer
2D / 3D web image, mesh, and point set viewer using itk-wasm and vtk.js
mcmicro
An end-to-end processing pipeline that transforms multi-channel whole-slide images into single-cell data.
nextflow
A DSL for data-driven computational pipelines
Nictiz-Snowstorm
Modified docker build package for building and deploying snowstorm and elasticsearch containers. Also contains examples of dockerized python ingest scripts for loading releases.
ome-zarr-py
Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
openapi
OpenAPI Specification (OAS) for the Vatstack API.
openconnect-gui-menu-bar
OpenConnect Menu Bar - Connect/Disconnect/Status - for Mac OS X
Simple-Jekyll-Search
A JavaScript library to add search functionality to any Jekyll blog.
SpaceHack2022-Xenium
Our team work on Xenium data for the SpaceHack 2022
spatialdata
Modular storage and efficient manipulation of spatial multimodal molecular data in Python
spatialdata-plot
Static plotting for spatialdata
staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
thesis_supplementary
Supplementary files to thesis.
webdev2data
Publieke data-repository voor practicum 2 van webdev