bashirhamidi

RedReader

An unofficial open source Android app for Reddit.

geometric

A JavaScript library for doing geometry.

phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

dada2

Accurate sample inference from amplicon data with single nucleotide resolution

Atlas

ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

MediationToolbox

Single-level and multi-level mediation analyses for any kind of data, with bootstrap-based significance testing. Neuroimaging-oriented functions allow for mediation effect parametric mapping (mapping of mediation effects across the brain) and multivariate mediation.

shiny-phyloseq

An interactive web application for demonstrating and using phyloseq.

energy

energy package for R

RAPSearch2

Reduced Alphabet based Protein similarity Search

i2b2-data

The i2b2 data repository

SUPER-FOCUS

A tool for agile functional analysis of shotgun metagenomic data

HIMA

High-dimensional Mediation Analysis (HIMA)

microbiome_plvm

Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."

OSG-GEM

Open Science Grid Workflow That Creates Gene Expression Matrices (GEMs) from SRA/FASTQ NGS Files

READ-TV

jukebox

phyloseq

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:

MedTest

A distance-based approach for testing the mediation effect of the microbiome

DicksonLabScripts

Scripts for everyday work in the Dickson lab

epistasis-formulas

Computes higher-order interactions such as 2-way, 3-way,…, n-way interaction coordinates and some circuits in the n-locus case taking as input 2^n experimental measurements.

Diversity_Productivity

Microhabitats associate with bacterial biodiversity-ecosystem function relationships

pyelixhauser

Python package to detect clinical morbodity in ICD10 and ICD9 codes

CancerUtils

perl-scripts-bioinformatic-made-simple-com

Automatically exported from code.google.com/p/perl-scripts-bioinformatic-made-simple-com