Mark Bashir Hamidi's starred repositories
MediationToolbox
Single-level and multi-level mediation analyses for any kind of data, with bootstrap-based significance testing. Neuroimaging-oriented functions allow for mediation effect parametric mapping (mapping of mediation effects across the brain) and multivariate mediation.
shiny-phyloseq
An interactive web application for demonstrating and using phyloseq.
RAPSearch2
Reduced Alphabet based Protein similarity Search
SUPER-FOCUS
A tool for agile functional analysis of shotgun metagenomic data
microbiome_plvm
Code for simulations and analysis for "Latent Variable Modeling for the Microbiome."
DicksonLabScripts
Scripts for everyday work in the Dickson lab
epistasis-formulas
Computes higher-order interactions such as 2-way, 3-way,…, n-way interaction coordinates and some circuits in the n-locus case taking as input 2^n experimental measurements.
Diversity_Productivity
Microhabitats associate with bacterial biodiversity-ecosystem function relationships
pyelixhauser
Python package to detect clinical morbodity in ICD10 and ICD9 codes
perl-scripts-bioinformatic-made-simple-com
Automatically exported from code.google.com/p/perl-scripts-bioinformatic-made-simple-com