Aroon Chande's repositories
sever
🔪Good-looking problems: customise your Shiny disconnected screen and error messages
aroonchan.de
https://aroonchan.de
covid19-event-risk-planner
COVID19 risk planner R-Shiny application
shinypanels
Collapsible panels layout for r shiny apps
bioconda-recipes
Conda recipes for the bioconda channel.
proteinatlas_pathology_processor
Automated ingesting and reannotation and quantification of HPA pathology images
proteinatlas_pathology_api
API for reannotated HPA data
html-to-svg
svg screenshot of web pages (saves the given URL to an SVG file)
cookiecutter-flask-restful
Flask cookiecutter template for builing APIs with flask-restful, including JWT auth, cli, tests, swagger, docker and more
covid-19-event-risk-planner
Charts that estimate collective risk that large events will have one (or more) COVID-19 positive individuals.
kounta
🧮 🔢 Generate multi-sample k-mer count matrix from WGS
TreeToReads
Pipeline to generate NGS reads from a phylogeny
repo-analytics.github.io
Thorough analytics for your GitHub repos
docker-ubuntu-vnc-desktop
Docker image to provide HTML5 VNC interface to access Ubuntu LXDE and LXQT desktop environment
cv
Latex markup for my CV: https://aroonchande.com/cv
lyve-SET
LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations
eggnog-mapper
Fast genome-wide functional annotation through orthology assignment
gitignore
A collection of useful .gitignore templates
vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
nord-putty
An arctic, north-bluish clean and elegant PuTTY color theme.
mic_prediction
Code for doing MIC predictions on genomes
dotfiles
kui's dotfiles and scripts
stringMLST
Fast k-mer based tool for multi locus sequence typing (MLST)
examples
Simple guided examples of how to use Caddy
pip
The PyPA recommended tool for installing Python packages
NASP
Northern Arizona SNP Pipeline