aquaskyline

llama.cpp

LLM inference in C/C++

Prompt-Engineering-Guide

🐙 Guides, papers, lecture, notebooks and resources for prompt engineering

AlDente-Charge-Limiter

macOS menubar tool to set Charge Limits and prolong battery lifespan

bioconda-recipes

Conda recipes for the bioconda channel.

deep-review

A collaboratively written review paper on deep learning, genomics, and precision medicine

scRNAseq-analysis-notes

scRNAseq analysis notes from Ming Tang

Sniffles

Structural variation caller using third generation sequencing

UNCALLED

Raw nanopore signal mapper that enables real-time targeted sequencing

Marlin

This Marlin fork has the goal of cleaning-up the source code changes for the CR-6 so it can be merged upstream. We also want to extend the functionality to make it fully functional

rtg-tools

RTG Tools: Utilities for accurate VCF comparison and manipulation

GraphAligner

Clair3

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

Clairvoyante

Clairvoyante: a multi-task convolutional deep neural network for variant calling in Single Molecule Sequencing

remora

Methylation/modified base calling separated from basecalling.

REFERS

Clair

Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling

bamcov

:boom: Quickly calculate and visualize sequence coverage in alignment files

VerifyBamID

VerifyBamID2: A robust tool for DNA contamination estimation from sequence reads using ancestry-agnostic method.

HG002_Data_Freeze_v1.0

Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)

ClairS

ClairS - a deep-learning method for long-read somatic small variant calling

Spectre

Copy number caller for long read data including SNV utilization

ClairS-TO

ClairS-TO - a deep-learning method for tumor-only somatic variant calling

Skyhawk

An Artificial Neural Network-based discriminator for validating clinically significant genomic variants

duet

SNP-Assisted SV Calling and Phasing Using ONT

Clair3-Trio

Clair3-Trio: variant calling in trio using Nanopore long-reads

Translocator

Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long reads

ChineseHanSouthGenome

Gapless, reference-quality Southern Han Chinese genome assembly and annotation

ChromSeg

A framework for crossing-overlap chromosome segmentation

Chromatin-Fiber-Imaging

Chromatin Fiber Imaging

Blockchain-Application-for-Biomedical-Data