antgonza

american-gut-analyses

american-gut-web

The website for the American Gut Project participant portal

biom-format

The Biological Observation Matrix (BIOM) Format Project

crossmodel_prediction

docs

Source repository for https://docs.qiime2.org

empress

A very fast and scalable phylogenetic visualization viewer

evident

Evident-initial-demo

Elucidating sampling effort for microbial analysis studies

iHMP-analyses

ili

A toolbox for molecular mapping in 2D and 3D in Chrome

labadmin

Administration website for the Knight Lab

labman

lab manager for plate maps and sequence flows

mds-approximations

Multidimensional scaling algorithms for microbiology-ecology datasets.

mSystems00105-16

MultiQC

Aggregate results from bioinformatics analyses across many samples into a single report.

mustached-octo-ironman

Easy dispatched compute via in a Tornado environment

oecophylla

shotgun pipeline

platypus

Confirming specific taxonomic groups within your samples.

pycogent

PyCogent: Official repository for software and unit tests

q2-diversity

qiime

Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests

qiime-deploy-conf

configuration files to be used with the qiime-deploy packages

qiime2

Official repository for the QIIME 2 framework.

qiimp

Web application to collect metadata specifications from an experimenter and produce metadata input files with appropriate constraints

qiita-paper

qp-shotgun

qurro

Visualize differentially ranked features (taxa, metabolites, ...) in tandem with log-ratios of their sample abundances

sample-size-stat-power-clinical-microbiome

songbird

Vanilla regression methods for microbiome differential abundance analysis

WGS-HGT

Workflow for detecting genome-wide horizontal gene transfers