antgonza

version-testing-fastp-minimap2

version-testing for fastp-minimap2

bioconda-recipes

Conda recipes for the bioconda channel.

emperor

qiita

Qiita - A QIIME databasing effort

bloom-analyses

cards

deblur

Deblur is a greedy deconvolution algorithm based on known read error profiles.

metagenomics_pooling_notebook

Jupyter notebooks to assist with sample processing

mg-scripts

Knight Lab internal Metagenomic processing scripts for demultiplexing, QC and host removal

q2-coordinates

methods for geographic mapping of qiime2 artifact data or metadata

q2-feature-table

QIIME 2 plugin supporting operations on feature tables.

q2-katharoseq

qebil

qiita-files

File formats defined for Qiita and Qiita plugins internal use

qiita_client

A python library that simplifies the communication between the plugins and Qiita's REST api

qp-deblur

qp-fastp-minimap2

Fast QC and host filtering for Whole Genome Sequencing and Metatranscriptomic sequencing

qp-knight-lab-processing

qp-meta

Qiita Woltka processing plugin with fast bowtie2 implemenetation

qp-qiime2

Qiime 2 plugin for Qiita

qp-spades

Qiita plugin to process metagenomic assemblies and isolates

qp-target-gene

qp-woltka

qtp-biom

qtp-diversity

Qiita Type Plugin for diversity types

qtp-job-output-folder

qtp-sequencing

qtp-visualization

Qiita type plugin for visualization artifacts

redbiom

Sample search by metadata and features

scikit-bio

Core objects, functions and statistics for working with biological data in Python.