analogiks's repositories
squidpy
Spatial Single Cell Analysis in Python
delta
A syntax-highlighting pager for git, diff, grep, and blame output
bat
A cat(1) clone with wings.
dust
A more intuitive version of du in rust
duf
Disk Usage/Free Utility - a better 'df' alternative
IMMREP23
Datasets from the IMMREP23 TCR specificity prediction challenge
erdtree
A modern, cross-platform, multi-threaded, and general purpose filesystem and disk-usage utility that is aware of .gitignore and hidden file rules.
epitopeprediction
A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
ente
Fully open source, End to End Encrypted alternative to Google Photos and Apple Photos
NetTCR-2.2
Sequence-based prediction of peptide-TCR interactions using paired chain data
FABind
FABind: Fast and Accurate Protein-Ligand Binding (NeurIPS 2023)
vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
augraphy
Augmentation pipeline for rendering synthetic paper printing, faxing, scanning and copy machine processes
deepdoctection
A Repo For Document AI
labelmm
The next Generation of Annotation Tools
dont-hold-your-breath
Breathing analysis with Polar H10 Heart Rate Monitor
hisat2
Graph-based alignment (Hierarchical Graph FM index)
AIOC
Ham Radio All-in-one-Cable
trinityrnaseq
Trinity RNA-Seq de novo transcriptome assembly
peptides.py
Physicochemical properties, indices and descriptors for amino-acid sequences.
Seq2Neo
Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction
pepsickle
A context aware tool for proteasomal cleavage predictions
OpenELM
Evolution Through Large Models
bedtools2
bedtools - the swiss army knife for genome arithmetic
stringtie
Transcript assembly and quantification for RNA-Seq
STAR
RNA-seq aligner
deephlapan
A deep learning approach for predicting high-confidence neoantigens by considering both the presentation possibilities of mutant peptides and the potential immunogenicity of pMHC