Alex Herbert's repositories
omero-user-scripts
Plugins for OMERO
gdsc-analytics
Use the Google Analytics Measurement Protocol to collect usage information from a Java application
omero-archiving
Uses the OMERO python API to tag images for archiving and move underlying image files to an archive
bioformats
Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
commons-csv
Mirror of Apache Commons CSV
commons-lang
Mirror of Apache Commons Lang
commons-numbers
Mirror of Apache Commons Complex Numbers
commons-rng
Mirror of Apache Commons RNG
commons-statistics
Mirror of Apache Commons Statistics
commons-text
Mirror of Apache Commons Text
distillCellSegTrack
Distilling Cellpose into more efficient models
docker-example-omero
OMERO Docker compose example
ExTrack
ExTrack MLE for diffusive noisy single-particle tracks
extrack-scripts
Contains scripts to use the ExTrack python library
gdsc-ctc-plugins
Fiji plugins providing CTC measures for quantitative evaluation of biomedical tracking in general.
gdsc-examples
Examples of use of the GDSC projects developed for ImageJ
gdsc-ij-parent
Parent for the GDSC ImageJ plugin projects
gdsc-smlm-ij-example-plugin
Example project for an ImageJ plugin using the GDSC SMLM library
gdsc-super
Contains all the GDSC ImageJ repos as submodules
java-unsigned-integers
Optimized, immutable Java implementations of fixed-width, unsigned integers.
list-of-update-sites
The update sites ImageJ knows about automatically
mastodon-ctc
Mastodon plugins to import from and export to (not only) the CellTrackingChallenge format
maven-compiler-plugin
Apache Maven Compiler Plugin