adrisede's repositories
awesome-cheatsheets
👩💻👨💻 Awesome cheatsheets for popular programming languages, frameworks and development tools. They include everything you should know in one single file.
awesome-pipeline
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
bamTobw
Convert BAM files to bigWig files with a simple command
bxtools
Tools for analyzing 10X Genomics data
cellranger
10x Genomics Single Cell 3' Gene Expression and VDJ Assembly
ChromosomeMappings
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
colorway
Functions for colors in R
docker
🐳 🍺 🐧 Dockerfiles for running Homebrew on Linux on various distros
fastq-pair
Match up paired end fastq files quickly and efficiently.
gallery_param_vs_projections
How embedding parameters affect different projection methods (tSNE, UMAP,etc).
graybuck2019analysis
Analysis scripts used for Graybuck, et al. (2019)
kent
UCSC Genome Browser source tree. Stable branch: "beta".
learning_bam_file_davetang
Learning the Sequence Alignment/Map format
lookup
Lookup R full function definitions, including compiled code, S3 and S4 methods.
lowcat
Low coverage accessibility and transcriptomics
miller
Miller is like awk, sed, cut, join, and sort for name-indexed data such as CSV, TSV, and tabular JSON
mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
oneliners
Useful bash one-liners for bioinformatics.
pbbioconda
PacBio Secondary Analysis Tools on Bioconda
purrr
A functional programming toolkit for R
purrrlyr
Tools at the intersection of purrr and dplyr
reference
Share quick reference cheat sheet for developers.
reveal.js
The HTML Presentation Framework
row-oriented-workflows
Row-oriented workflows in R with the tidyverse
shinytest-travis-ci
A template for setting up shinytest with Travis CI and renv
webinars
Code and slides for RStudio webinars
what-they-forgot
What They Forgot To Teach You About R, homepage for "how to's" and workshops