adrisede's repositories
level-up-shiny
Take your Shiny skills to the next level
oneliners
Useful bash one-liners for bioinformatics.
learning_bam_file_davetang
Learning the Sequence Alignment/Map format
awesome-cheatsheets
π©βπ»π¨βπ» Awesome cheatsheets for popular programming languages, frameworks and development tools. They include everything you should know in one single file.
reference
Share quick reference cheat sheet for developers.
kent
UCSC Genome Browser source tree. Stable branch: "beta".
pbbioconda
PacBio Secondary Analysis Tools on Bioconda
mosdepth
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
fastq-pair
Match up paired end fastq files quickly and efficiently.
ChromosomeMappings
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
lookup
Lookup R full function definitions, including compiled code, S3 and S4 methods.
lowcat
Low coverage accessibility and transcriptomics
webinars
Code and slides for RStudio webinars
shinytest-travis-ci
A template for setting up shinytest with Travis CI and renv
reveal.js
The HTML Presentation Framework
colorway
Functions for colors in R
gallery_param_vs_projections
How embedding parameters affect different projection methods (tSNE, UMAP,etc).
purrr
A functional programming toolkit for R
purrrlyr
Tools at the intersection of purrr and dplyr
what-they-forgot
What They Forgot To Teach You About R, homepage for "how to's" and workshops
awesome-pipeline
A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin
cellranger
10x Genomics Single Cell 3' Gene Expression and VDJ Assembly
miller
Miller is like awk, sed, cut, join, and sort for name-indexed data such as CSV, TSV, and tabular JSON
graybuck2019analysis
Analysis scripts used for Graybuck, et al. (2019)
docker
π³ πΊ π§ Dockerfiles for running Homebrew on Linux on various distros
bxtools
Tools for analyzing 10X Genomics data
row-oriented-workflows
Row-oriented workflows in R with the tidyverse