abhi18av

Alda-VsCode

Syntax highlighting for Alda - a music programming language.

bacannot

Generic but comprehensive pipeline for prokaryotic genome annotation and interrogation with interactive reports and shiny app.

bionitio-clojure

Demonstrating best practices for bioinformatics command line tools

clojure-deps-edn

User level aliases and Clojure CLI configuration for deps.edn based projects

gatk4-germline-snps-indels

Workflow for germline short variant discovery using GATK4

h3agwas

GWAS Pipeline for H3Africa

hello_nf

modules

Repository to host tool-specific module files for the Nextflow DSL2 community!

multi-package-containers

Testing building mulled containers for multi-requirement tools.

nf-staging-stress-stage

Test script to stress test Nextflow staging mechanism.

nf-tower-docs-orgs-and-teams

nf-tower-docusaurus

nf-training

Training material for https://carpentries-incubator.github.io/workflows-nextflow/

rnaseq-nf

A proof of concept of RNAseq pipeline

4clojure-solutions-archive

Anonymised solutions archive of 4clojure.com

bactmap

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

bactopia.github.io

Bactopia Documentation

BACTpipe

BACTpipe: An assembly and annotation pipeline for bacterial genomics

bioconda-recipes

Conda recipes for the bioconda channel.

clj-py-r-template

dsub

Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

gentb-nf

The Nextflow version of https://github.com/farhat-lab/gentb-snakemake

h2o-3

Open Source Fast Scalable Machine Learning Platform For Smarter Applications: Deep Learning, Gradient Boosting & XGBoost, Random Forest, Generalized Linear Modeling (Logistic Regression, Elastic Net), K-Means, PCA, Stacked Ensembles, Automatic Machine Learning (AutoML), etc.

hello-kubernetes-nf

nf-tower-k8s

openfaas-clojure-template

An OpenFaaS template for writing functions in Clojure

rclone

"rsync for cloud storage" - Google Drive, S3, Dropbox, Backblaze B2, One Drive, Swift, Hubic, Wasabi, Google Cloud Storage, Yandex Files

sarek

Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing

test-datasets

Test data to be used for automated testing with the nf-core pipelines

why_cryptocurrencies

Source for the book "Why Cryptocurrencies?"