mycobactopia-org

mycobactopia-org's repositories

MTBSeq made simple and easy using Nextflow and nf-core standard.

Language:NextflowMIT8 3 41

Language:GroovyMIT300

Comprehensive pipeline for detection of TB from ONT adaptive sequencing and amplicon data.

Language:NextflowBSD-3-Clause100

nextflow pipeline for analyzing Mycobacterium bovis genomes

Language:NextflowMIT000

CRyPTIC data processing pipelines

Language:HTMLMIT000

MAGMA pipeline (based on XBS-core and Nextflow)

Language:NextflowGPL-3.0000

CNN models for antibiotic resistance prediction in M. tuberculosis genomes. From Green & Yoon et al (forthcoming)

Language:Jupyter Notebook000

A pipeline to remove contaminant NGS reads from TB-sputum samples

Language:MakefileGPL-3.0000

Deep Learning-based A Tool used to Drug Resistance Prediction of Mycobacterium tuberculosis Utilizing Whole Genome Mutations

Language:Python000