WWXkenmo

Ken Wang 's starred repositories

cellrank

CellRank: dynamics from multi-view single-cell data

Language:PythonBSD-3-Clause337 9 706

torchode

A parallel ODE solver for PyTorch

Language:PythonMIT212 2 37

The Compositional Perturbation Autoencoder (CPA) is a deep generative framework to learn effects of perturbations at the single-cell level. CPA performs OOD predictions of unseen combinations of drugs, learns interpretable embeddings, estimates dose-response curves, and provides uncertainty estimates.

Language:Jupyter NotebookMIT175 15 11

cookietemple

A collection of best practice cookiecutter templates for all domains and languages with extensive Github support ⛺

Language:PythonApache-2.0156 6 281

SpiceMix

spatial transcriptome, single cell

Language:Jupyter NotebookMIT62 3 4

DEsingle

Homepage: https://miaozhun.github.io/DEsingle. Bioconductor page: https://bioconductor.org/packages/DEsingle.

Language:R30 2 14

ENIGMA

A fast and accurate deconvolution algorithm based on regularized matrix completion algorithm (ENIGMA)

Language:HTMLMIT26 1 12

velodyn

Dynamical systems methods for RNA velocity analysis

Language:PythonApache-2.023 6 1

awesome-AI4SingleCell

Must-read papers on deep learning based methodology paper for single cell data analysis

Apache-2.020 40

ICAnet

Independent Component Analysis decipher functional modules for better cell clustering and annotation

Language:R15 1 5

CIDER

R package CIDER: Meta-Clustering for Single-Cell Data Integration and Evaluation

Language:HTMLMIT6 1 5