Virtual Fly Brain

neo4j2owl

Semantics preserving mapping of OWL 2 EL and Neo4J. Under development, do not use.

training

Repository for training notebooks

VFB_connect

A library for querying VFB servers (neo4j, owlery, solr)

geppetto-vfb

VFB (v2) application

VFB2

Virtual Fly Brain Documentation Site

VFB_reporting_results

Repository containing the results of various data change and consistency checking.

curation

A repository of records specifying curation into the VFB Knowledge Base

Docker-VFB-Neo4j

Basic Neo4J instance setup for VFB

jupyterhub

wrapper with github Oauth

NBLAST_matrix_proc

org.geppetto.frontend

Geppetto frontend bundle (Web Application)

SOLR_sideloader

Pass data directly from PDB to SOLR server

vfb-driver-ontology

vfb-extension-ontology

A small application ontology used by VFB.

vfb-neurotransmitter-predictions

Neurotransmitter predictions and confidence values for VFB individuals. Data taken from neuprint.

vfb-pipeline-collectdata

vfb-pipeline-dumps

Pipeline that creates dumps from the triplestore for consumption by the downstream services

vfb-pipeline-polishing

Final cypher steps after complete pipeline load

vfb-pipeline-update-prod

vfb-pipeline-updatetriplestore

vfb-prod

vfb-scRNAseq-gene-annotations

vfb-scRNAseq-ontology

An ontology of Drosophila melanogaster scRNAseq data pulled from FlyBase.

VFB_connect_api

API wrapping VFB_connect library

VFB_connectomics_import

A project to produce RDF/OWL representations of connectomics data for import to the VFB integration layer triple store.

VFB_json_schema

VFB json schema spec + code for rolling queries producing VFB json schema + related integration tests

VFB_neo4j

A python package for writing schema-compliant content to VFB neo4J DBs

VFB_reporting

Scripts for reporting on the state of VFB content and pipeline

vfb_rest

Workshop_NeuroFly2024

Notebooks and info for the VFB workshop at NeuroFly 2024