The Geneweaver Core Python library provides shared foundational functionality for the Geneweaver project. It is a dependency of all other Geneweaver Python libraries, and is not intended to be used directly.
The Geneweaver Core library is available on PyPI and can be installed with pip:
pip install geneweaver-coreIf you are using Poetry, you can add the Geneweaver Core library to your project with:
poetry add geneweaver-coreThis package is structured so as to share an import path with other geneweaver packages. This allows you to install
the package and import it without having to worry about the package name. For example, if you install the geneweaver-core
package, as well as the geneweaver-db package, you can import the geneweaver package and access both libraries:
from geneweaver import core, dbThe Geneweaver Core library provides the following functionality:
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geneweaver.core.schema: Pydantic schema definitions -
geneweaver.core.enum: Enumerations -
geneweaver.core.config: Configuration managementGeneweaverBaseSettings: Base Settings class to inherit from for your own package's configuration classesGeneweaverCoreSettings: Configuration class for Geneweaver Core settings
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geneweaver.core.exc: Geneweaver shared exceptionsGeneweaverException: Base exception class for GeneweaverGeneweaverError: Base error class for GeneweaverGeneweaverWarning: Base warning class for Geneweaver
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geneweaver.core.pase: Geneweaver file parsing functionalitybatch: Functions for parsing a batch filescore: Functions for parsing a scorecsv: Functions for parsing a CSV filexlsx: Functions for parsing an Excel fileenum: Enumerations for file parsingexceptions: Exceptions for file parsingutils: Utility functions for file parsing
geneweaver.core.logging: Shared logging managementgeneweaver.core.utils: Shared utility functions