Teichlab / SpatialDE

Test genes for Spatial Variation

Teichlab/SpatialDE Issues

AttributeError: Module 'scipy' has no attribute 'arange'
Updated 2 months ago4
SVD did not converge in Linear Least Squares
Updated 5 months ago1
SVD did not converge in Linear Least Squares
Closed 2 years ago2
Multi-dimensional indexing (e.g. `obj[:, None]`) is no longer supported.
Updated 7 months ago3
it seems that this is a bug in SpatialDE
Updated 7 months ago
How do we restrict the number of cores used?
Closed a year ago2
Error: Unable to allocate 932. GiB for an array with shape (353762, 353762)
Updated 10 months ago1
What to do when `delta_ELBO` never converges
Updated a year ago1
multi-dimensional indexing (obj[:, None]) is no longer supported
Closed a year ago1
Duplicate entry in results table if max_ll is the same across two model runs
Updated a year ago
hello ,canyou help me ?
Updated a year ago1
Large datasets
Updated 2 years ago
Cannot pull lfs
Closed 2 years ago1
over its data quota
Closed 2 years ago
adapting the method for higher dimensions
Closed 2 years ago6
Potential redundancy in computation of `ln_P_mu` function
Updated 3 years ago
AEH `fit_patterns` always outputs nan
Closed 3 years ago1
How To Solve KeyError: “None of [Index([..], dtype='object')] are in the [columns]”/KeyError(f“None of [{key}] are in the [{axis_name}]”)
Closed 3 years ago
FloatingPointError
Updated 4 years ago
Maybe a typo in R code?
Updated 4 years ago
p value
Updated 4 years ago2
no convergence in AEH
Closed 5 years ago2
how to pick l in AEH
Closed 5 years ago2
qval = 0.00
Closed 5 years ago1
sign_results = results.query('qval < 0.5')
Closed 5 years ago1
Determining optimal C for AEH
Updated 5 years ago3
Looks like cellBoundaries.mat is missing from MERFISH
Closed 5 years ago2
DEBUG level for logging
Closed 6 years ago1
Softmax instability?
Closed 6 years ago7
Meaning of columns in sample info file
Closed 6 years ago1
Heads-up on git lfs
Closed 7 years ago3
Minimum number of samples?
Closed 7 years ago1